Q96RM9

Homosapiens Y Chromosome Protein


 

Protein Sequence

>Q96RM9|Q96RM9_HUMAN Melanoma-associated chondroitin sulfate proteoglycan-like - Homo sapiens(Human)

MAFSNADSGFVDAQLVLTHKDLLSGSIMATDEPMQPIFCFIQEGPQEEASPVHALRLTMA

GSCCMCPTGSTRPSWCWRCRPWSLTSMWPMAPASRSLKETRVPSIWPSSTWAPTSTSAVG

MRSTTTSQTALAGDSCSRPLSQHSLRPEGPAGWGRSLWPQWQPQLXQHPGLLNGCGAFSM

XXGPSQWMWGQCTQTVHTVHSTSDHCPRGPTSPTEAGLAQEDLHLPGRGS

Primary Structure

Compute pI

           Theoretical pI        6.69

           Molecular weight    24911.75 (Daltons)

Protparam 

           Formula                 ---

           Sequence Length    230

           Total Atoms           ---

Secondary Structure

 GOR, HNN & SOPMA

GOR

HNN

SOPMA

Alpha Helix

Extended Strand

Random Coil

Alpha Helix

Extended Strand

Random Coil

Alpha Helix

Extended Strand

Beta Turn

Random Coil

10.87
33.04
56.09
10.00
11.74
78.26
13.48
16.52
6.09
63.91

Tertiary Structure Prediction

I-TASSER 

3-D Structure predicted By I-tasser server(Ab initio method) = Q96RM9

-----The estimate of Q96RM9----------- 

 #model  :  C-score    TM-score         RMSD (in Angstroms)
Q96RM9 :  -4.00      0.29 +- 0.09   15.4 +- 3.4

      C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER server:

  1) Yang Zhang. I-TASSER server for protein 3D structure prediction.
   BMC Bioinformatics, 9:40 (2008).
  2) Yang Zhang. Template-based modeling and free modeling by
   I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
  3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of
   small proteins by iterative TASSER simulations. BMC Biology,
   5:17 (2007).

Structure Validation

PROCHECK 

           Saves Result : Procheck Summary                                  Ramachandran Plot: Plot Statistics

Function Prediction

Interproscan

COG

Pfam

Blast

No hits reported
No relative Cog
Keratin, high sulfur B2 protein No hits

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