P22090

Homosapiens Y Chromosome Protein


 

Protein Sequence

>P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1 - Homo sapiens (Human)

MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE

VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK

YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL

CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR

GKGIRLTVAEERDKRLATKQSSG

Primary Structure

Compute pI

              Theoretical pI        10.25

              Molecular weight    29455.62 (Daltons)

Protparam 

              Formula                 C1322H2159N389O354S9

              Sequence Length    263

              Total Atoms           4233

Secondary Structure

 GOR, HNN & SOPMA

GOR

HNN

SOPMA

Alpha Helix

Extended Strand

Random Coil

Alpha Helix

Extended Strand

Random Coil

Alpha Helix

Extended Strand

Beta Turn

Random Coil

17.49
35.36
47.15
24.71
34.60
40.68
22.43
31.56
9.89
36.12

Tertiary Structure Prediction

I-TASSER 

3-D Structure predicted By I-tasser server(Ab initio method) = P22090

-----The estimate of P22090 -----------
 #model  :   C-score     TM-score         RMSD (in Angstroms)
P22090 :   -3.89        0.29+-0.09    15.5 +- 3.3

      C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER server:

  1) Yang Zhang. I-TASSER server for protein 3D structure prediction.
   BMC Bioinformatics, 9:40 (2008).
  2) Yang Zhang. Template-based modeling and free modeling by
   I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
  3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of
   small proteins by iterative TASSER simulations. BMC Biology,
   5:17 (2007).

Structure Validation

PROCHECK

           Saves Result : Procheck Summary                                      Ramachandran Plot: Plot Statistics

Function Prediction

Interproscan

GOG

Pfam

Blast

Ribosomal protein S4e, RNA-binding S4, KOW, Ribosomal protein S4e, N-terminal, Ribosomal protein S4e, N-terminal and RNA-binding, Ribosomal protein S4e, Ribosomal protein S4E RS4NT (NUC023) domain, S4 domain, Ribosomal family S4e, Fertility inhibition protein (FINO), KOW motif, Putative tRNA binding domain RS4NT (NUC023) domain., Ribosomal_S4e, Ribosomal family S4e.,

                     Home