a2rug3

A2RUG3

Homosapiens Y Chromosome Protein

Protein Sequence

>A2RUG3|XKRY2_HUMAN Testis-specific XK-related protein,Y-linked 2 -Homosapiens (Human)

MFIFNSIADDIFPLISCVGAIHCNILAIRTGNDFAAIKLQVIKLIYLMIWHSLVIISPVV

TLAFFPASLKQGSLHFLLIIYFVLLLTPWLEFSKSGTHLPSNTKNNSSMVGKYGCLS

Primary Structure

Compute pI

Theoretical pI 8.91

Molecular weight 12987.55 (Daltons)

Protparam

Formula C₆₁₂H₉₅₆N₁₄₄O₁₅₄S₆

Sequence Length 117

Total Atoms 1872

_{Secondary Structure}

_{GOR, HNN & SOPMA}

_{Tertiary Structure Prediction}

I-TASSER

3-D Structure predicted By I-tasser server(Ab initio method) = A2RUG3

-----The estimate of A2RUG3-----------

#model : C-score TM-score RMSD (in Angstroms)

A2RUG3 : -3.48 0.33+-0.11 12.2+- 4

C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER server:

1) Yang Zhang. I-TASSER server for protein 3D structure prediction.

BMC Bioinformatics, 9:40 (2008).

2) Yang Zhang. Template-based modeling and free modeling by

I-TASSER in CASP7. Proteins, 8: 108-117 (2007).

3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of

small proteins by iterative TASSER simulations. BMC Biology,

5:17 (2007).

Structure Validation

PROCHECK

Saves Result : Procheck summary Ramachandran Plot: Plot statistics

Function Prediction

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