q8td47

Q8TD47

Homosapiens Y Chromosome Protein

Protein Sequence

>Q8TD47|RS4Y2_HUMAN 40S ribosomal protein S4, Y isoform 2 - Homo sapiens (Human)

MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE

VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK

YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV

CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR

GKGIRLTIAEERDKRLAAKQSSG

Primary Structure

Compute pI

Theoretical pI 10.10

Molecular weight 29295.42 (Daltons)

Protparam

Formula C₁₃₁₂H₂₁₄₃N₃₈₅O₃₅₄S₁₀

Sequence Length 263

Total Atoms 4204

_{Secondary Structure}

_{GOR, HNN & SOPMA}

_{Tertiary Structure Prediction}

I-TASSER

3-D Structure predicted By I-tasser server(Ab initio method) = Q8TD47

-----The estimate of Q8TD47 -----------

#model : C-score TM-score RMSD (in Angstroms)

Q8TD47 : -3.81 0.30+-0.10 15.2 +- 3.4

C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER server:

1) Yang Zhang. I-TASSER server for protein 3D structure prediction.

BMC Bioinformatics, 9:40 (2008).

2) Yang Zhang. Template-based modeling and free modeling by

I-TASSER in CASP7. Proteins, 8: 108-117 (2007).

3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of

small proteins by iterative TASSER simulations. BMC Biology,

5:17 (2007).

Structure Validation

PROCHECK

Saves Result : Procheck Summary Ramachandran Plot: Plot Statistics

Function Prediction

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