Homosapiens Y Chromosome Protein
>tr|A6NDJ3|A6NDJ3_HUMAN Uncharacterized protein TSPY1 OS=Homo sapiens GN=TS PY1
MRPEGSLTYWVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALG
EEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVELE
PVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDM
LSYMVSLEVEEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYLD
YEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTET
SGDSQLLS
Compute pI
Theoretical pI 5.16
Molecular weight 35146.67(Daltons)
Protparam
Formula C1548H2413N437O472S14
Sequence Length 308
Total Atoms 4884
GOR, HNN & SOPMA
I-TASSER
3-D Structure predicted By I-tasser server(Ab initio method) = A6NDJ3
-----The estimate of A6NDJ3 -----------
#model : C-score TM-score RMSD (in Angstroms)
A6NDJ3 : -2.75 0.40+-0.13 12.8+-4.2
C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER server:
1) Yang Zhang. I-TASSER server for protein 3D structure prediction.
BMC Bioinformatics, 9:40 (2008).
2) Yang Zhang. Template-based modeling and free modeling by
I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of
small proteins by iterative TASSER simulations. BMC Biology,
5:17 (2007).
PROCHECK
Saves Result : Procheck summary Ramachandran Plot: Plot Statistics
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