Q13374

Homosapiens Y Chromosome Protein


 

Protein Sequence

>Q13374|Q13374_HUMAN RNA binding motif - Homo sapiens (Human)

MVEADCHGKLFIGGLNREANEKMLKXXXXKHGPIW

Primary Structure

Compute pI 

 Theoretical pI         7.96
 
Molecular weight    3523.15 (Daltons)  

Protparam    

              Formula                       -----      

              Sequence Length      35

          Total Atoms           ----

Secondary Structure         

GOR, HNN & SOPMA  

GOR

HNN

SOPMA

Alpha Helix

Extended Strand

Random Coil

Alpha Helix

Extended Strand

Random Coil

Alpha Helix

Extended Strand

Beta Turn

Random Coil

22.86
37.14
40.00
17.14
14.29
68.57
34.29
22.86
11.43
31.43

Tertiary Structure Prediction

I-TASSER 

3-D Structure predicted By I-tasser server(Ab initio method) = Q13374

-----The estimate of Q13374-----------

 #model : C-score TM-score RMSD (in Angstroms)
 Q13374 :  -0.61 0.64+-0.13 3.1+-2.2

      C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER server:

  1) Yang Zhang. I-TASSER server for protein 3D structure prediction.
   BMC Bioinformatics, 9:40 (2008).
  2) Yang Zhang. Template-based modeling and free modeling by
   I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
  3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of
   small proteins by iterative TASSER simulations. BMC Biology,
   5:17 (2007).

Structure Validation

PROCHECK   

   Saves Result : Procheck Summary                                               Ramachandran Plot: Plot statistics

Function Prediction


Interproscan

COG

Pfam

Blast

Y chromosome RNA recognition motif, unintegrated

No related Cog

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) No Putative conserved domains have been detected

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