A6NLN9
Homosapiens Y Chromosome Protein
Protein Sequence
>A2RUG3|XKRY2_HUMAN Testis-specific XK-related protein, Y-linked 2 - Homo sapiens (Human)
MFIFNSIADDIFPLISCVGAIHCNILAIRTGNDFAAIKLQVIKLIYLMIWHSLVIISPVV
TLAFFPASLKQGSLHFLLIIYFVLLLTPWLEFSKSGTHLPSNTKNNSSMVGKYGCLS
Primary Structure
Compute pI
Theoretical pI 8.91
Molecular weight 12987.55 (Daltons)
Protparam
Formula C612H956N144O154S6
Sequence Length 117
Total Atoms 1872
Secondary Structure
GOR, HNN & SOPMA
GOR |
HNN |
SOPMA |
|||||||
Alpha Helix |
Extended Strand |
Random Coil |
Alpha Helix |
Extended Strand |
Random Coil |
Alpha Helix |
Extended Strand |
Beta Turn |
Random Coil |
23.08 |
27.35 |
49.57 |
51.28 |
13.68 |
35.04 |
52.14 |
24.79 |
2.56 |
20.51 |
Tertiary Structure Prediction
3-D Structure predicted By I-tasser server(Ab initio method) = A2RUG3.pdb
-----The estimate of A2RUG3-----------
#model : C-score TM-score RMSD (in Angstroms)
A2RUG3 : -3.48 0.33+-0.11 12.2+- 4
C-score is a confidence score of the I-TASSER predictions which is
typically in [-5,2]. TM-score and RMSD measure how close the model is
to the native structure and both are estimated based on the C-score.
TM-score is in [0,1] with a value >0.5 implying the model of correct
topology. The TM-score and RMSD estimations are made only for the first
model because absolute values of TM-score and RMSD for the lower-rank
models do not strongly correlate with the C-score. The models are
ranked based on the structure density of I-TASSER simulations.Please
cite following articles when you use the I-TASSER server:
1) Yang Zhang. I-TASSER server for protein 3D structure prediction.
BMC Bioinformatics, 9:40 (2008).
2) Yang Zhang. Template-based modeling and free modeling by
I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of
small proteins by iterative TASSER simulations. BMC Biology,
5:17 (2007).
Predicted Function
Interproscan |
GOG |
Pfam |
Blast |
Unintegrated |
No relative Cog |
No hits |
No putative domains |