q496e4

Q496E4

Homosapiens Y Chromosome Protein

Protein Sequence

>Q496E4|Q496E4_HUMAN Ribosomal protein S4, Y-linked 1 - Homo sapiens (Human)

MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE

VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK

YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL

CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR

GKGIRLTVAEERDKRLAAKQSSG

Primary Structure

Compute pI

Theoretical pI 10.25

Molecular weight 29425.59 (Daltons)

Protparam

Formula C₁₃₂₁H₂₁₅₇N₃₈₉O₃₅₃S₉

Sequence Length 263

Total Atoms 4229

_{Secondary Structure}

_{GOR, HNN & SOPMA}

_{Tertiary Structure Prediction}

I-TASSER

3-D Structure predicted By I-tasser server(Ab initio method) = Q496E4

-----The estimate of Q496E4-----------

#model : C-score TM-score RMSD (in Angstroms)

Q496E4 : -3.85 0.30 +- 0.10 15.4 +- 3.4

C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER server:

1) Yang Zhang. I-TASSER server for protein 3D structure prediction.

BMC Bioinformatics, 9:40 (2008).

2) Yang Zhang. Template-based modeling and free modeling by

I-TASSER in CASP7. Proteins, 8: 108-117 (2007).

3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of

small proteins by iterative TASSER simulations. BMC Biology,

5:17 (2007).

Structure Validation

PROCHECK

Saves Result : Procheck Summary Ramachandran Plot: Plot Statistics

Function Prediction

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