a6nde4

A6NDE4

Homosapiens Y Chromosome Protein

Protein Sequence

>A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B - Homo sapiens (Human)

MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD

AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR

GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS

QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY

RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR

ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD

EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA

YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI

VDGGESRSEKGDSSRY

Primary Structure

Compute pI

Theoretical pI 9.96

Molecular weight 55834.60(Daltons)

Protparam

Formula C₂₃₆₉H₃₆₃₄N₈₀₀O₇₅₆S₁₃

Sequence Length 496

Total Atoms 7572

_{Secondary Structure}

_{GOR, HNN & SOPMA}

_{Tertiary Structure Prediction}

I-TASSER

3-D Structure predicted By I-tasser server(Ab initio method) = A6NDE4

-----The estimate of A6NDE4 -----------

#model : C-score TM-score RMSD (in Angstroms)

A6NDE4 : -1.38 0.54+-0.15 10.5+-4.6

C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER server:

1) Yang Zhang. I-TASSER server for protein 3D structure prediction.

BMC Bioinformatics, 9:40 (2008).

2) Yang Zhang. Template-based modeling and free modeling by

I-TASSER in CASP7. Proteins, 8: 108-117 (2007).

3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of

small proteins by iterative TASSER simulations. BMC Biology,

5:17 (2007).

Structure Validation

PROCHECK

Saves Result : Procheck summary Ramachandran Plot: Plot statistics

Function Prediction

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