# 変更すべき箇所は緑色で示しています
export SUBJECTS_DIR=/data_wo_matometa_drive/MRI_wo_matomeru_directory
export SUBJECT=hikenja_no_namae
export DICOM_DIR=/dicom_no_aru_directory
mksubjdirs $SUBJECTS_DIR/$SUBJECT
cd $SUBJECTS_DIR/$SUBJECT/mri/T1
cp -pR $DICOM_DIR/* ./
MRIFILE=(*)
mri_convert $MRIFILE $SUBJECTS_DIR/$SUBJECT/mri/orig/001.mgz
recon-all -all -subject $SUBJECT
cd $SUBJECTS_DIR
mne_watershed_bem --subject $SUBJECT
mne_setup_mri --subject $SUBJECT --mri T1
mne_setup_source_space --subject $SUBJECT --ico -6
cd $SUBJECTS_DIR/$SUBJECT/bem
ln -s watershed/"$SUBJECT"_inner_skull_surface inner_skull.surf
ln -s watershed/"$SUBJECT"_outer_skull_surface outer_skull.surf
ln -s watershed/"$SUBJECT"_outer_skin_surface outer_skin.surf
mne_setup_forward_model --subject $SUBJECT --surf --ico 4