MNEで使うMRIの処理（コメントなし）

# 変更すべき箇所は緑色で示しています

export SUBJECTS_DIR=/data_wo_matometa_drive/MRI_wo_matomeru_directory

export SUBJECT=hikenja_no_namae

export DICOM_DIR=/dicom_no_aru_directory

mksubjdirs $SUBJECTS_DIR/$SUBJECT

cd $SUBJECTS_DIR/$SUBJECT/mri/T1

cp -pR $DICOM_DIR/* ./

MRIFILE=(*)

mri_convert $MRIFILE $SUBJECTS_DIR/$SUBJECT/mri/orig/001.mgz

recon-all -all -subject $SUBJECT

cd $SUBJECTS_DIR

mne_watershed_bem --subject $SUBJECT

mne_setup_mri --subject $SUBJECT --mri T1

mne_setup_source_space --subject $SUBJECT --ico -6

cd $SUBJECTS_DIR/$SUBJECT/bem

ln -s watershed/"$SUBJECT"_inner_skull_surface inner_skull.surf

ln -s watershed/"$SUBJECT"_outer_skull_surface outer_skull.surf

ln -s watershed/"$SUBJECT"_outer_skin_surface outer_skin.surf

mne_setup_forward_model --subject $SUBJECT --surf --ico 4