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ALiX
Overview
About this manual
Acknowledgments
ALiX Companions
ALiX Keyboard Shortcuts
ALiX Menus
Analysis menu
Edit Menu
File menu
Graphs menu
Help menu
Pages menu
Windows menu
ALiX Pages
Advanced Background Analysis
ALEX Analysis
Background Analysis
Burst Analysis
# Burst(t)
Burst Duration Histograms
Burst Statistics CDF
Burst Statistics Definitions
Burst Data Export
Statistics Aliases Definitions
Burst Statistics Histograms
Burst Statistics vs Burst Duration
Statistics 2 vs Statistics 1
Burst Search
Correlation Analysis
Count Rate Analysis
Data File
Data Preprocessing
Gamma Analysis
Nanotime Analysis
Nanotime Display
Scripting
Burst Rate Analysis 1 (beta)
Burst Rate Analysis 2 (beta)
Monitored Variables
Multispot Analysis
Compute ACFs Script
Compute Afterpulsing Probabilities
Compute CCFs Script
Fit Fluorescence Decays
General Multispot Analysis
Sliding Window Analysis (beta)
Time Trace
us Alternation Periods
ALiX Reference
ALiX Scripting
Basic Burst Statistics
Curve Fitting
Fit Algorithms
Fit Models
Asymmetric Gaussian
Asymmetric Lorentzian
Correlation Function Fit
2D Gaussian + Blinking
2D Gaussian + Flow
2D Gaussian CF
3D Gaussian
3D Gaussian + Blinking
Gaussian
Gaussian/Lorentzian
Lorentzian
Lorentzian/Gaussian
Single Component Fit
Single Exponential
Three Asymmetric Gaussians
Three Components Fit
Three Gaussians
Two Asymmetric Gaussians
Two Components Fit
Two Exponentials
Two Gaussians
Two Horizontally-Connected Asymmetric Gaussians
Two Horizontally-Connected Gaussians
Two Tilted-Connected Asymmetric Gaussians
Two Tilted-Connected Gaussians
Graphs & Charts
ALiX Windows
About ALiX
ALiX Notebook
Burst Inspector
Context Help
Histogram Analysis
Nanotime Histogram Analysis
Settings
ALEX Corrections
ALEX Settings
Background Rates
Correlation Analysis
General Settings
Histogram Fits
KDE Analysis
Lifetime Histograms Settings
Shot Noise Analysis
Shot Noise Analysis
Bibliography
Download & Installation Instructions
Downloads Repository
FAQ
Introduction
Known Issues
Quick Start
Support
Tutorials
Example Files
Multispot Data Analysis
Multispot Tutorial 1: smFRET Analysis (unscripted)
Multispot Tutorial 2: smFRET Analysis (scripted)
Multispot Tutorial 3: Shot Noise Analysis (scripted)
Single-Spot Data Analysis
Single-Spot Tutorial 1: us ALEX FRET Analysis
Single-Spot Tutorial 2: us ALEX FCS Analysis
Single-Spot Tutorial 3: us ALEX Shot Noise Analysis
Version History
Workflow
ALiX
Multispot Tutorial 2: smFRET Analysis (scripted)
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