Following are the attached snapshots demonstrating the logic behind converting 19602*21 features and the files containing python script used for conversion and their outputs. It contains the source file(original 19k ) which was changed to binary using derived thresholds and their sum across the rows with their ranking score. It also contains top 100 and bottom 100 features files.
Strategy 4 used in Vax-Elan pipeline
XP_816052.1 phosphate-repressible phosphate permease [Trypanosoma cruzi strain CL Brener]
XP_807493.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
XP_803296.1 dispersed gene family protein 1 (DGF-1), partial [Trypanosoma cruzi strain CL Brener]
XP_822017.1 trans-sialidase [Trypanosoma cruzi strain CL Brener]
XP_819804.1 nucleoside transporter-like [Trypanosoma cruzi strain CL Brener]
XP_820852.1 serine/threonine protein kinase [Trypanosoma cruzi strain CL Brener]
XP_815460.1 receptor-type adenylate cyclase, partial [Trypanosoma cruzi strain CL Brener]
XP_812509.1 UDP-N-acetylglucosamine--dolichyl-phosphate n- acetylglucosaminephosphotransferase [Trypanosoma cruzi strain CL Brener]
No intersection of proteins were found upon filtering of proteins via Strategy-4 and Strategy-1.
Strategy-4:-
XP_816052.1 phosphate-repressible phosphate permease [Trypanosoma cruzi strain CL Brener]
XP_807493.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
XP_803296.1 dispersed gene family protein 1 (DGF-1), partial [Trypanosoma cruzi strain CL Brener]
XP_822017.1 trans-sialidase [Trypanosoma cruzi strain CL Brener]
XP_819804.1 nucleoside transporter-like [Trypanosoma cruzi strain CL Brener]
XP_820852.1 serine/threonine protein kinase [Trypanosoma cruzi strain CL Brener]
XP_815460.1 receptor-type adenylate cyclase, partial [Trypanosoma cruzi strain CL Brener]
XP_812509.1 UDP-N-acetylglucosamine--dolichyl-phosphate n- acetylglucosaminephosphotransferase [Trypanosoma cruzi CL Brener]
Strategy-1:-
XP_809166.1 mucin-associated surface protein (MASP) [Trypanosoma cruzi strain CL Brener]
XP_816522.1 mucin TcMUCII [Trypanosoma cruzi strain CL Brener]
XP_815016.1 90 kDa surface protein [Trypanosoma cruzi strain CL Brener]
XP_818708.1 trans-sialidase [Trypanosoma cruzi strain CL Brener]
XP_821916.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
XP_804513.1 dispersed gene family protein 1 (DGF-1), partial [Trypanosoma cruzi strain CL Brener]
XP_816111.1 subtilisin-like serine peptidase [Trypanosoma cruzi strain CL Brener]
XP_806816.1 DnaJ chaperone protein [Trypanosoma cruzi strain CL Brener]
No intersection of proteins were found upon filtering of proteins via Strategy-4 and Strategy-2.
Strategy-4:-
XP_816052.1 phosphate-repressible phosphate permease [Trypanosoma cruzi strain CL Brener]
XP_807493.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
XP_803296.1 dispersed gene family protein 1 (DGF-1), partial [Trypanosoma cruzi strain CL Brener]
XP_822017.1 trans-sialidase [Trypanosoma cruzi strain CL Brener]
XP_819804.1 nucleoside transporter-like [Trypanosoma cruzi strain CL Brener]
XP_820852.1 serine/threonine protein kinase [Trypanosoma cruzi strain CL Brener]
XP_815460.1 receptor-type adenylate cyclase, partial [Trypanosoma cruzi strain CL Brener]
XP_812509.1 UDP-N-acetylglucosamine--dolichyl-phosphate n- acetylglucosaminephosphotransferase [Trypanosoma cruzi CL Brener]
Strategy-2:-
XP_809166.1 mucin-associated surface protein (MASP) [Trypanosoma cruzi strain CL Brener]
XP_811700.1 mucin TcMUCII [Trypanosoma cruzi strain CL Brener]
XP_822020.1 90 kDa surface protein [Trypanosoma cruzi strain CL Brener]
XP_804447.1 ubiquitin-conjugating enzyme E2 [Trypanosoma cruzi strain CL Brener]
XP_807999.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
XP_806523.1 IgE-dependent histamine-releasing factor [Trypanosoma cruzi strain CL Brener]
XP_808372.1 small nuclear ribonucleoprotein Sm-E [Trypanosoma cruzi strain CL Brener]
XP_818708.1 trans-sialidase [Trypanosoma cruzi strain CL Brener]
No intersection of proteins were found upon filtering of proteins via Strategy-4 and Strategy-3.
Strategy-4:-
XP_816052.1 phosphate-repressible phosphate permease [Trypanosoma cruzi strain CL Brener]
XP_807493.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
XP_803296.1 dispersed gene family protein 1 (DGF-1), partial [Trypanosoma cruzi strain CL Brener]
XP_822017.1 trans-sialidase [Trypanosoma cruzi strain CL Brener]
XP_819804.1 nucleoside transporter-like [Trypanosoma cruzi strain CL Brener]
XP_820852.1 serine/threonine protein kinase [Trypanosoma cruzi strain CL Brener]
XP_815460.1 receptor-type adenylate cyclase, partial [Trypanosoma cruzi strain CL Brener]
XP_812509.1 UDP-N-acetylglucosamine--dolichyl-phosphate n- acetylglucosaminephosphotransferase [Trypanosoma cruzi CL Brener]
Strategy-3:-
XP_805056.1 mucin-associated surface protein (MASP) [Trypanosoma cruzi strain CL Brener]
XP_802955.1 mucin TcMUCII [Trypanosoma cruzi strain CL Brener]
XP_815016.1 90 kDa surface protein [Trypanosoma cruzi strain CL Brener]
XP_807308.1 trans-sialidase [Trypanosoma cruzi strain CL Brener]
XP_821176.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
XP_804140.1 dispersed gene family protein 1 (DGF-1), partial [Trypanosoma cruzi strain CL Brener]
XP_816111.1 subtilisin-like serine peptidase [Trypanosoma cruzi strain CL Brener]
XP_806816.1 DnaJ chaperone protein [Trypanosoma cruzi strain CL Brener]
No intersection of proteins were found upon filtering of proteins via Strategy-4 and Strategy-5.
Strategy-4:-
XP_816052.1 phosphate-repressible phosphate permease [Trypanosoma cruzi strain CL Brener]
XP_807493.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
XP_803296.1 dispersed gene family protein 1 (DGF-1), partial [Trypanosoma cruzi strain CL Brener]
XP_822017.1 trans-sialidase [Trypanosoma cruzi strain CL Brener]
XP_819804.1 nucleoside transporter-like [Trypanosoma cruzi strain CL Brener]
XP_820852.1 serine/threonine protein kinase [Trypanosoma cruzi strain CL Brener]
XP_815460.1 receptor-type adenylate cyclase, partial [Trypanosoma cruzi strain CL Brener]
XP_812509.1 UDP-N-acetylglucosamine--dolichyl-phosphate n- acetylglucosaminephosphotransferase [Trypanosoma cruzi CL Brener]
Strategy-5:-
XP_809117.1 hypothetical protein [Trypanosoma cruzi strain CL Brener]
XP_821990.1 mucin-associated surface protein (MASP [Trypanosoma cruzi strain CL Brener]
RNC42421.1 mucin TcMUCII [Trypanosoma cruzi]
XP_803883.1 GP85-like protein, partial [Trypanosoma cruzi strain CL Brener]
AAL90889.1 Tcc1j12.3 [Trypanosoma cruzi]
XP_809960.1 trans-sialidase [Trypanosoma cruzi strain CL brener]
XP_808931.1 mucin TcMUCIII {Trypanosoma cruzi strain CL Brener]