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List of RNAs
List of RNAs
From Wikipedia, the free encyclopedia
This is a list of RNAs in nature. Some of these categories are broad, others are single RNA families.
RNAs involved in protein synthesis
Type
Abbr.
Function
Distribution
Ref.
mRNA
rRNA
7SL RNA or SRP RNA
tRNA
tmRNA
All organisms
All organisms
All organisms
All organisms
Bacteria
RNAs involved in post-transcriptional modification or DNA replication
Type
Abbr.
Function
Distribution
Ref.
snRNA
snoRNA
SmY
scaRNA
gRNA
RNase P
RNase MRP
Splicing and other functions
Nucleotide modification of RNAs
mRNA trans-splicing
Type of snoRNA; Nucleotide modification of RNAs
mRNA nucleotide modification
tRNA maturation
rRNA maturation, DNA replication
RNA processing, DNA replication
Telomere synthesis
Regulatory RNAs
Type
Abbr.
Function
Distribution
Ref.
aRNA
crRNA
Long ncRNA
miRNA
piRNA
siRNA
tasiRNA
rasiRNA
7SK
Transcriptional attenuation / mRNA degradation / mRNA stabilisation / Translation block
Gene regulation
Resistance to parasites, probably by targeting their DNA
Various
Gene regulation
Transposon defense, maybe other functions
Gene regulation
Gene regulation
Type of piRNA; transposon defense
negatively regulating CDK9/cyclin T complex
All organisms
Bacteria and archaea
Eukaryotes
Most eukaryotes
Most animals
Mosteukaryotes
Land plants
Drosophila
Parasitic RNAs
Type
Function
Distribution
Ref.
Self-propagating
Information carrier
Self-propagating
Self-propagating
Eukaryotes and some bacteria
Double-stranded RNA viruses, positive-sense RNA viruses, negative-sense RNA viruses, many satellite viruses and reverse transcribing viruses
Infected plants
Infected cells
Other RNAs
Type
Abbr.
Function
Distribution
Ref.
[edit]
See also
See also
References
References
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- ^ Gillet R, Felden B (2001). "Emerging views on tmRNA-mediated protein tagging and ribosome rescue". Molecular Microbiology 42 (4): 879–85.doi:10.1046/j.1365-2958.2001.02701.x.
- ^ Thore S, Mayer C, Sauter C, Weeks S, Suck D (2003). "Crystal Structures of the Pyrococcus abyssi Sm Core and Its Complex with RNA". J. Biol. Chem. 278 (2): 1239–47. doi:10.1074/jbc.M207685200.
- ^ Kiss T (2001). "Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs". The EMBO Journal 20: 3617–22.doi:10.1093/emboj/20.14.3617.
- ^ Jones TA, Otto W, Marz M, Eddy SR, Stadler PF (2009). "A survey of nematode SmY RNAs". RNA Biol 6 (1): 5–8. PMID 19106623.
- ^ Alfonzo JD, Thiemann O, Simpson L (1997). "The mechanism of U insertion/deletion RNA editing in kinetoplastid mitochondria". Nucleic Acids Research 25 (19): 3751–59. doi:10.1093/nar/25.19.3751. PMID 9380494.
- ^ Pannucci JA, Haas ES, Hall TA, Harris JK, Brown JW (1999). "RNase P RNAs from some Archaea are catalytically active". Proc Natl Acad Sci USA96 (14): 7803–08. doi:10.1073/pnas.96.14.7803. PMID 10393902.
- ^ Woodhams MD, Stadler PF, Penny D, Collins LJ (2007). "RNase MRP and the RNA processing cascade in the eukaryotic ancestor". BMC Evolutionary Biology 7: S13. doi:10.1186/1471-2148-7-S1-S13.
- ^ Perreault J, Perreault J-P, Boire G (2007). "Ro-associated Y RNAs in metazoans: evolution and diversification". Molecular Biology and Evolution 24(8): 1678–89. doi:10.1093/molbev/msm084.
- ^ Lustig AJ (1999). "Crisis intervention: The role of telomerase". Proc Natl Acad Sci USA 96 (7): 3339–41. doi:10.1073/pnas.96.7.3339. PMID 10097039.
- ^ Brantl S (2002). "Antisense-RNA regulation and RNA interference". Biochimica et Biophysica Acta 1575 (1–3): 15–25. PMID 12020814.
- ^ Brantl S (2007). "Regulatory mechanisms employed by cis-encoded antisense RNAs". Curr. Opin. Microbiol. 10 (2): 102–9.doi:10.1016/j.mib.2007.03.012. PMID 17387036.
- ^ Brouns SJ, Jore MM, Lundgren M, et al. (August 2008). "Small CRISPR RNAs guide antiviral defense in prokaryotes". Science (New York, N.Y.) 321(5891): 960–4. doi:10.1126/science.1159689. PMID 18703739.
- ^ Lin S-L, Miller JD, Ying S-Y (2006). "Intronic microRNA (miRNA)". Journal of Biomedicine and Biotechnology 2006: 1–13.doi:10.1155/JBB/2006/26818. PMID 17057362.
- ^ Horwich MD, Li C Matranga C, Vagin V, Farley G, Wang P, Zamore PD (2007). "The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC". Current Biology 17: 1265–72. doi:10.1016/j.cub.2007.06.030.
- ^ Ghildiyal M, Zamore PD (February 2009). "Small silencing RNAs: an expanding universe". Nat. Rev. Genet. 10 (2): 94–108. doi:10.1038/nrg2504.PMID 19148191.
- ^ Ahmad K, Henikoff S (2002). "Epigenetic consequences of nucleosome dynamics". Cell 111 (3): 281–84. doi:10.1016/S0092-8674(02)01081-4.
- ^ Vazquez F, Vaucheret H (2004). "Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs". Mol. Cell (16): 1–13. PMID 17057362.
- ^ Desset S, Buchon N, Meignin C, Coiffet M, Vaury C (2008). "In Drosophila melanogaster the COM locus directs the somatic silencing of two retrotransposons through both Piwi-dependent and -independent pathways". PLoS ONE 3 (2): e1526. doi:10.1371/journal.pone.0001526. PMID 18253480.
- ^ Boeke JD (2003). "The unusual phylogenetic distribution of retrotransposons: a hypothesis". Genome Research 13: 1975–83.doi:10.1101/gr.1392003. PMID 12952870.
- ^ Flores R, Hernández C, Martínez de Alba AE, Daròs JA, Di Serio F (2005). "Viroids and viroid-host interactions". Annual Review of Phytopathology 43: 117–39. doi:10.1146/annurev.phyto.43.040204.140243. PMID 16078879.
- ^ Gopinath SC, Matsugami A, Katahira M, Kumar PK (2005). "Human vault-associated non-coding RNAs bind to mitoxantrone, a chemotherapeutic compound". Nucleic Acids Res. 33 (15): 4874–81. doi:10.1093/nar/gki809. PMID 16150923.
External links
External links
- Rfam database — a collection of RNA families
- European ribosomal RNA database
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