130421
21/4/2013
Showing results 1 through 54 (of 54 total) for all:epigenetics
1. arXiv:1304.4799 [pdf, ps, other]
Robust partial likelihood approach for detecting imprinting and maternal effects using case-control families
Comments: Published in at this http URL the Annals of Applied Statistics (this http URL) by the Institute of Mathematical Statistics (this http URL)
Journal-ref: Annals of Applied Statistics 2013, Vol. 7, No. 1, 249-268
Subjects: Applications (stat.AP)
2. arXiv:1304.3381 [pdf]
Life Before Earth
Alexei A. Sharov, Richard Gordon
Comments: 26 pages, 3 figures
Subjects: General Physics (physics.gen-ph)
3. arXiv:1304.2174 [pdf, other]
Epigenetic Tracking: a Model for Multicellular Biology
Comments: 33 pages, 16 figures. arXiv admin note: substantial text overlap with arXiv:1012.2276
Subjects: Cell Behavior (q-bio.CB); Populations and Evolution (q-bio.PE)
4. arXiv:1302.7276 [pdf]
Role of genetic polymorphisms in transgenerational inheritance of inherent as well as acquired traits in budding yeast
Zuobin Zhu, Qing Lu, Dejian Yuan, Yanke Li, Xian Man, Yueran Zhu, Shi Huang
Comments: 5 pages, 3 figures
Subjects: Genomics (q-bio.GN); Populations and Evolution (q-bio.PE)
5. arXiv:1211.6664 [pdf]
Compression of structured high-throughput sequencing data
Fabien Campagne, Kevin C. Dorff, Nyasha Chambwe, James T. Robinson, Jill P. Mesirov, Thomas D. Wu
Comments: main article: 2 figures, 2 tables. Supplementary material: 2 figures, 4 tables. Comment on this manuscript on Twitter or Google Plus using handle #Goby2Paper
Subjects: Quantitative Methods (q-bio.QM); Databases (cs.DB); Genomics (q-bio.GN)
6. arXiv:1211.4263 [pdf, ps, other]
Mathematical framework of epigenetic DNA methylation in gene body Arabidopsis
Comments: 23 pp, 5 figures, Appendix file
Subjects: Quantitative Methods (q-bio.QM); Molecular Networks (q-bio.MN)
7. arXiv:1211.3133 [pdf, other]
Epigenetic landscapes explain partially reprogrammed cells and identify key reprogramming genes
Alex H. Lang, Hu Li, James J. Collins, Pankaj Mehta
Comments: 19 pages with Supplementary Information, 10 Figures, 4 Data Files. v2 correctly attaches Data Files, no paper changes. v3 only change in Data File TF_Reprogramming_Candidates.xls so that Overexpression / Knockout were in separate lists
Subjects: Molecular Networks (q-bio.MN); Disordered Systems and Neural Networks (cond-mat.dis-nn); Statistical Mechanics (cond-mat.stat-mech)
8. arXiv:1210.1237 [pdf, other]
Multisite Population Epigenetic Model of Passive Demethylation
Subjects: Populations and Evolution (q-bio.PE)
9. arXiv:1209.4967 [pdf]
Comparative Analysis of Tandem Repeats from Hundreds of Species Reveals Unique Insights into Centromere Evolution
Daniël P. Melters, Keith R. Bradnam, Hugh A. Young, Natalie Telis, Michael R. May, J. Graham Ruby,Robert Sebra, Paul Peluso, John Eid, David Rank, José Fernando Garcia, Joseph L. DeRisi, Timothy Smith, Christian Tobias, Jeffrey Ross-Ibarra, Ian F. Korf, Simon W.-L. Chan
Journal-ref: Genome Biology 2013
Subjects: Genomics (q-bio.GN)
10. arXiv:1209.4603 [pdf]
Global Epigenetic State Network Governs Cellular Pluripotent Reprogramming and Transdifferentiation
Ping Wang, Chaoming Song, Hang Zhang, Zhanghan Wu, Jianhua Xing
Comments: 18 pages,4 figures, 2 tables
Subjects: Molecular Networks (q-bio.MN)
11. arXiv:1209.3802 [pdf, other]
Titration and hysteresis in epigenetic chromatin silencing
Adel Dayarian, Anirvan M. Sengupta
Subjects: Molecular Networks (q-bio.MN)
12. arXiv:1207.3624 [pdf, other]
How to Grow an Organism Inside-Out: Evolution of an internal skeleton from an external skeleton in bilateral organisms
Comments: 9 pages. Key Words: Metazoan evolution, inside-out growth, inside-out development, internal skeleton, external skeleton, exoskeleton, bilateral symmetry, developmental control networks, embryo genesis, cell orientation, Cambrian Explosion
Subjects: Tissues and Organs (q-bio.TO); Molecular Networks (q-bio.MN); Subcellular Processes (q-bio.SC)
13. arXiv:1207.3289 [pdf, other]
The Origin, Evolution and Development of Bilateral Symmetry in Multicellular Organisms
Comments: 29 pages
Subjects: Tissues and Organs (q-bio.TO); Computational Engineering, Finance, and Science (cs.CE)
14. arXiv:1207.2728 [pdf, other]
The Influence of Decoys on the Noise and Dynamics of Gene Expression
Anat Burger, Aleksandra M. Walczak, Peter G. Wolynes
Comments: 8 pages, 4 figures
Subjects: Molecular Networks (q-bio.MN)
15. arXiv:1205.2571 [pdf, ps, other]
The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state
Swagatam Mukhopadhyay, Anirvan M. Sengupta
Comments: Supplementary Material, 14 pages
Subjects: Molecular Networks (q-bio.MN); Quantitative Methods (q-bio.QM)
16. arXiv:1203.3954 [pdf]
Gender differences in time perception and its relation with academic performance: non-linear dynamics in the formation of cognitive systems
Klaus Jaffe, Guillermo Mascitti, Daniella Seguias
Comments: Politically incorrect paper practically impossible to publish in a psychology journal
Subjects: Neurons and Cognition (q-bio.NC)
17. arXiv:1201.0921 [pdf]
Nucleosomes in gene regulation: theoretical approaches
V. B. Teif, A. V. Shkrabkou, V. P. Egorova, V. I. Krot
Journal-ref: Molecular Biology, 2012, Vol. 46, No. 1, pp. 1--10
Subjects: Genomics (q-bio.GN); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph)
18. arXiv:1112.2095 [pdf, other]
Real-time face swapping as a tool for understanding infant self-recognition
Sao Mai Nguyen (INRIA Bordeaux - Sud-Ouest), Masaki Ogino, Minoru Asada
Journal-ref: International Conference on Epigenetic Robotics, Glumslov : Sweden (2010)
Subjects: Artificial Intelligence (cs.AI); Computer Vision and Pattern Recognition (cs.CV)
19. arXiv:1106.3005 [pdf, other]
Spatial structure increases the waiting time for cancer
Erik A. Martens, R. Kostadinov, Carlo C. Maley, Oskar Hallatschek
Comments: 21 pages
Journal-ref: New Journal of Physics 13, 115014 (2011)
Subjects: Populations and Evolution (q-bio.PE); Adaptation and Self-Organizing Systems (nlin.AO)
20. arXiv:1101.4984 [pdf, ps, other]
Rate distortion coevolutionary dynamics and the flow nature of cognitive epigenetic systems
James F. Glazebrook, Rodrick Wallace
Comments: 22 pages
Subjects: Other Quantitative Biology (q-bio.OT)
21. arXiv:1101.3251 [pdf]
Timing is everything: on the stochastic origins of cell-to-cell variability in cancer cell death decisions
Joanna Skommer, Subhadip Raychaudhuri, Donald Wlodkowic
Comments: 18 pages, 5 figures
Journal-ref: Frontiers in Bioscience 16:307-14, 2011
Subjects: Cell Behavior (q-bio.CB); Molecular Networks (q-bio.MN)
22. arXiv:1012.2276 [pdf, other]
Epigenetic Tracking: a model for all biology
Comments: 42 pages, 23 figures
Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Quantitative Methods (q-bio.QM)
23. arXiv:1011.2025 [pdf, ps, other]
Statistical inference of transmission fidelity of DNA methylation patterns over somatic cell divisions in mammals
Audrey Qiuyan Fu, Diane P. Genereux, Reinhard Stöger, Charles D. Laird, Matthew Stephens
Comments: Published in at this http URL the Annals of Applied Statistics (this http URL) by the Institute of Mathematical Statistics (this http URL)
Journal-ref: Annals of Applied Statistics 2010, Vol. 4, No. 2, 871-892
Subjects: Applications (stat.AP); Genomics (q-bio.GN); Quantitative Methods (q-bio.QM)
24. arXiv:1010.3268 [pdf, other]
Mapping Dynamic Histone Acetylation Patterns to Gene Expression in Nanog-depleted Murine Embryonic Stem Cells
Florian Markowetz, Klaas W Mulder, Edoardo M Airoldi, Ihor R Lemischka, Olga G Troyanskaya
Comments: accepted at PLoS Computational Biology
Journal-ref: PLoS Comp Bio, 2010 Dec 16;6(12):e1001034
Subjects: Genomics (q-bio.GN)
25. arXiv:1006.4642 [pdf]
Presymptomatic risk assessment for chronic non-communicable diseases
Badri Padhukasahasram, Eran Halperin, Jennifer Wessel, Daryl Thomas, Elana Silver, Heather Trumbower, Michele Cargill, Dietrich Stephan
Comments: Plos ONE paper. Previous version was withdrawn to be updated by the journal's pdf version
Journal-ref: 2010 PLoS ONE 5(12): e14338. doi:10.1371/journal.pone.0014338
Subjects: Genomics (q-bio.GN); Quantitative Methods (q-bio.QM); Applications (stat.AP); Methodology (stat.ME)
26. arXiv:1005.4896 [pdf, other]
A hypothesis on the role of transposons
Comments: 8 pages, 9 figures
Subjects: Adaptation and Self-Organizing Systems (nlin.AO)
27. arXiv:1004.3162 [pdf]
Consequences of cell-to-cell P-glycoprotein transfer on acquired multidrug resistance in breast cancer: a cell population dynamics model
Jennifer Pasquier, Pierre Magal, Céline Boulangé-Lecomte, Glenn Webb, Frank Le Foll
Comments: 13 pages, 8 figures, 1 table
Subjects: Biomolecules (q-bio.BM)
28. arXiv:1003.1927 [pdf, ps, other]
Evolutionary dynamics of tumor progression with random fitness values
Rick Durrett, Jasmine Foo, Kevin Leder, John Mayberry, Franziska Michor
Comments: 33 pages, 2 Figures
Journal-ref: Theoretical Population Biology, Volume 78, Issue 1, August 2010, Pages 54-66
Subjects: Probability (math.PR); Tissues and Organs (q-bio.TO)
29. arXiv:1002.1600 [pdf, ps, other]
Theory for stability and regulation of epigenetic landscapes
Mille A. Micheelsen, Namiko Mitarai, Kim Sneppen, Ian. B. Dodd
Comments: references added
Journal-ref: Phys. Biol. 7, 026010 (2010)
Subjects: Molecular Networks (q-bio.MN)
30. arXiv:1001.4972 [pdf, ps, other]
Higher Order Boolean networks as models of cell state dynamics
Elke K. Markert, Nils Baas, Arnold J. Levine, Alexei Vazquez
Comments: 26 pages, 5 figures
Subjects: Molecular Networks (q-bio.MN)
31. arXiv:1001.4246 [pdf, other]
Topological interactions between ring polymers: Implications for chromatin loops
Manfred Bohn, Dieter W. Heermann
Comments: 12 pages, 11 figures. The article has been accepted by The Journal Of Chemical Physics. After it is published, it will be found at this http URL
Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Chemical Physics (physics.chem-ph); Biomolecules (q-bio.BM)
32. arXiv:1001.2810 [pdf, other]
Epigenetic Tracking: Implementation Details
Comments: 26 pages, 20 figures
Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Cell Behavior (q-bio.CB)
33. arXiv:0912.4465 [pdf, other]
A quantum spin approach to histone dynamics
C. Gils, J.L. Wrana, W.K. Abou Salem
Comments: 12 pages, 6 figures
Subjects: Molecular Networks (q-bio.MN); Biomolecules (q-bio.BM)
34. arXiv:0912.4102 [pdf]
Scale-free dynamics of somatic adaptability in immune system
Comments: 14 pages, 8 figures
Subjects: Biological Physics (physics.bio-ph); Cell Behavior (q-bio.CB)