Allele Depth AD is lower than expected
Allele Depth AD is lower than expected
AnalyzeCovariates fails with error message RScript exited with 1
Cant use VQSR on nonmodel organism or small dataset
Deep sequencing data is missing variants in M2 called vcf
Error message File is larger than 1000000 Bytes
Error messages Internal Server Error or Gateway Timeout
Errors about contigs in BAM or VCF files not being properly ordered or sorted
Errors about contigs in BAM or VCF files not being properly ordered or sorted
Errors about input files having missing or incompatible contigs
Errors about input files having missing or incompatible contigs
Errors about misencoded quality scores
Errors about misencoded quality scores
Errors about read group RG information
Errors about read group RG information
Errors in SAMBAM files can be diagnosed with ValidateSamFile
Errors in SAMBAM files can be diagnosed with ValidateSamFile
Exception in thread main javalangNoClassDefFoundError orgxerialsnappyLoadSnappy
Expected variant at a specific site was not called
I am unable to use VQSR recalibration to filter variants
I do not get the annotations I specified with A
I expect to see a variant at a specific site but its not getting called
I need to process readgrouplevel files but theres no obvious place for them in the data model
I need to run programs that require different versions of Java
Im getting an endless spinner Loading auth message when trying to access the web portal
Java is using too many resources threads memory or CPU
Known Issues with Mutect2 GATK41
Known Issues with VariantRecalibrator
Missing annotations in the output callset VCF
missing physical phasing information in vcf
My billing account isnt showing up or has an error message
Need to run programs that require different versions of Java