created by Geraldine_VdAuwera
on 2012-07-19
The documentation articles in this section cover:
Please note that while many of the articles contain command lines and argument values, these are given as examples only and may not be the most appropriate for your dataset. It is your responsibility to ascertain that the parameters you use for analysis make sense considering your experimental design and materials.
In addition, certain examples, argument names, usages and values may become obsolete over time. We try to update the documentation regularly but some articles may fall through the net. This occasionally leads to apparent contradictions between articles in this section and the Technical Documentation that is available for each tool. When in doubt, keep in mind that the Technical Documentation is updated more frequently and always trumps other documentation sources.
official, about
Updated on 2013-01-14
From mboursnell on 2012-07-23
Hi. I want to ask a question about the best “pipeline” (is this the same as a “work flow”) for targetted sequencing in the dog. Which section should I ask that in?
From Geraldine_VdAuwera on 2012-07-23
Pipelines are essentially the same thing as workflows, yes.
Please ask all questions about usage of the GATK in the “Ask the team” section.