At the HOPE Lab, we share detailed instructions on the composition, preparation, and preservation of microbial culture media used for cultivating bacteria and fungi, provided to our students as part of their training. All details presented here, including media formulations, preparation steps, and storage practices, are part of our student training resources and are prepared specifically for HOPE Lab students.
This page introduces the most commonly used microbiological media types in our lab, including:
In addition, students will find information on:
These materials are designed to help HOPE Lab students build practical skills in microbial cultivation and laboratory techniques as part of their supervised coursework.
Nutrient agar is a general purpose non-selective medium and supports growth of a wide variety of bacteria. NA is commonly used for bacterial isolation and maintenance.
Peptone: 0.5 %
Beef extract or yeast extract: 0.3 %
NaCl: 0.5 %
Agar: 1.5 %
Adjust pH to 7.0
(Also known as Luria broth, Lennox broth, or Luria–Bertani medium)
LB is also a general purpose non-selective media that supports growth of a large variety of non-fastidious bacteria. It is one of the most frequently used media for bacterial isolation and culture.
Peptone: 1.0 %
Beef extract or yeast extract: 0.5 %
NaCl: 1.0 %
Agar: 1.5 %
Adjust pH to 7.0
Trypticase Soy Agar (TSA) is another general purpose non-selective media that provides nutrients to support growth of a wide variety of bacteria.
Tryptone: 1.5 %
Soytone: 0.5 %
NaCl: 0.5 %
Agar: 1.5 %
R2A medium is frequently used for the isolation of slow-growing bacteria. It is also a non-selective medium but many slow-growing species that do not appear to be isolated using the above nutritionally rich media such as LB or TSA, could be isolated using R2A.
Peptone: 0.05 %
Casamino acids: 0.05 %
Yeast extract: 0.05 %
Dextrose: 0.05%
Soluble starch: 0.05%
Dipotassium phosphate: 0.03 %
Magnesium sulfate: 0.005 %
Sodium pyruvate: 0.03 %
Agar: 1.5 %
Alkaline nutrient agar media is used for the enrichment, isolation and culture of alkaliphilic and alkalitolerant bacteria.
Peptone: 0.5 %
Beef extract or yeast extract: 0.3 %
Agar: 1.5 %
After autoclaving, adjust to desired alkaline pH with sterile 10% Na2CO3 solution or with the following Na-sesquicarbonate solution.
Na-sesquicarbonate solution:
NaHCO3: 0.42 %
Na2CO3 anhydrous: 0.53 %
It is another common media for the enrichment, isolation and culture of alkaliphilic bacteria.
Glucose: 1%
Peptone: 0.5 %
Yeast extract: 0.5 %
KH2PO4: 0.1 %
MgSO4 . 7H2O: 0.02%
Agar: 2.0 %
After autoclaving, adjust to desired alkaline pH with sterile 10% Na2CO3 solution.
For the enrichment, isolation and growth of alkaliphilic bacteria.
Replace glucose with soluble starch in Horikoshi-I media described above.
MRS is an enriched selective medium used for the isolation, cultivation and enumeration of lactic acid bacteria.
Dextrose: 2 %
Peptone: 1 %
Beef extract: 1 %
Yeast extract: 0.5 %
Dipotassium hydrogen phosphate: 0.2 %
Sodium acetate 3H2O: 0.5%
Triammonium citrate: 0.2 %
Magnesium sulphate: 7H2O: 0.01 %
Manganese sulphate: 4H2O: 0.005 %
Tween-80: 0.1 %
Agar: 1-1.5 %
pH 6.25
M17 is also used for the cultivation and enumeration of lactic acid bacteria.
Tryptone: 0.5 %
Soya peptone: 0.5 %
Beef extract: 0.5 %
Yeast extract: 0.25 %
Ascorbic acid: 0.05 %
Magnesium sulphate: 0.025 %
Di-sodium-beta-glycerophosphate: 0.19 %
Agar: 1.1 %
pH 6.9
Sabouraud's dextrose agar (SDA) is a common fungal culture medium.
Dextrose: 4 %
Peptone: 1 %
Agar: 2 %
pH 5.6
To prepare a 1-liter media, mix and dissolve appropriate amount of all ingredients in around 800 mL of distilled water. Check and adjust pH if necessary with an appropriate acid or alkali solution. For solid or semi-solid media, add appropriate amount of agar (usually 1 to 2%). Finally add more water to make the final volume 1 liter. Sterilize by steam autoclave at 121 °C and 15 psi for 15 min.
Most of the prepared media can be stored for a few months at 2-8 °C, preferably away from light. Many liquid broths can also be stored at room temperature (25 °C) for weeks to months. It is, however, better to use freshly prepared media if possible. Agar plates should be stored in inverted position.
We prepare glycerol stocks of our cultures for long-term preservation. Here are the steps we use for preparing and preserving glycerol stocks:
Growing the culture:
Grow the microorganism of interest in an appropriate growth medium until it reaches the desired growth phase (we usually prefer late log phase cultures).
Preparing the glycerol stock:
In a sterile cryogenic vial or microfuge tube, combine an equal volume of the microbial culture and sterile 50% glycerol solution. For example, mix 500 μL of culture with 500 μL of 50% glycerol so that the final glycerol concentration reaches 25%. We usually use a final glycerol concentration of ~20%
Gently mix the contents by inverting the tube a few times to ensure thorough mixing.
Freezing the glycerol stock:
Immediately place the glycerol stock in a -80°C freezer, or if unavailable in a .-40°C freezer
Storage and retrieval:
To retrieve a culture, remove the glycerol stock from the freezer, thaw it quickly at room temperature or placing in ice and then streak a small amount of the thawed culture onto an appropriate solid growth medium using a sterile tooth pick or inoculation loop.
It is recommended to prepare multiple glycerol stocks for each culture to ensure backup samples in case of freezer failure or other issues.