Reference
Cytochrome P450 HomepageNelson, DR (2009) The Cytochrome P450 Homepage. Human Genomics 4, 59-65.AlphafoldJohn Jumper, Richard Evans, Alexander Pritzel, et al. - Highly accurate protein structure prediction with AlphaFold. Nature, 1–11, doi: 10.1038/s41586-021-03819-2 (2021)ColabfoldMirdita M, Ovchinnikov S and Steinegger M. ColabFold - Making protein folding accessible to all. bioRxiv, doi: 10.1101/2021.08.15.456425 (2021)Localcolabfoldhttps://github.com/YoshitakaMo/localcolabfoldReference
Uniprothttps://www.uniprot.org/CompareMhttps://github.com/dparks1134/CompareMAlphaFold Protein Structure Database (AlphaFold DB)https://alphafold.ebi.ac.uk/
P450_Clusterhttps://github.com/CYP152N1/P450_Cluster
D. R. Nelson's
D. R. Nelson's
https://twitter.com/P450nelson/status/1501396401317883904
HF 24,845
HY 18,148
HR 16,580
HQ 12,484
HH 9,666
HA 8,431
HV 5,850
HS 4,260
HK 3,821
HT 3,552
Total 123,914
HL 3,201
HM 2,970
HG 2,528
HE 1,991
HI 1,690
HN 1,168
HD 239
HP 120
HW 26
HCG 13
Clastaling of 1/4 batch of HGC Sequence
CYP122A2 (A1_A3...HKC)
CYP179A1 (A2...HAC)
CYP217A1
CYP222A1
CYP263A1
CYP145B1_C1 (A1...HVC)
CYP157B3 (A1...HRC)
CYP233A2_A3_A4 (A1...HHC)
CYP1027B1 (A1...HRC)
Cluster_HG1 (775)
Cluster_HG1 (775)
Alined PDBs (315)
Alined PDBs (315)
Cluster_HG2 (659)
Cluster_HG2 (659)
Alined PDBs (115)
Alined PDBs (115)
Cluster_HG3 (272)
Cluster_HG3 (272)
Alined PDBs (84)
Alined PDBs (84)
Cluster_HG4 (97)
Cluster_HG4 (97)
Alined PDBs (38)
Alined PDBs (38)
Cluster_HG5 (92)
Cluster_HG5 (92)
Alined PDBs (32)
Alined PDBs (32)
Cluster_HG6 (83)
Cluster_HG6 (83)
Alined PDBs (30)
Alined PDBs (30)
Cluster_HG7 (72)
Cluster_HG7 (72)
Alined PDBs (29)
Alined PDBs (29)
Cluster_HG8 (64)
Cluster_HG8 (64)
Alined PDBs (23)
Alined PDBs (23)
Cluster_HG9 (52)
Cluster_HG9 (52)
Alined PDBs (26)
Alined PDBs (26)
Cluster_HG10 (48)
Cluster_HG10 (48)
Alined PDBs (43)
Alined PDBs (43)
Cluster_HG11 (43)
Cluster_HG11 (43)
Alined PDBs (12)
Alined PDBs (12)
Cluster_HG12 (43)
Cluster_HG12 (43)
Alined PDBs (19)
Alined PDBs (19)
Others_HG (232)
Others_HG (232)
Alined PDBs (137)
Alined PDBs (137)