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Newman Memory Lab
Lab Wiki
General
0. Joining the lab
1. New Lab Members- Start here!
+ How To Read A Scientific Paper
+ Papers to start reading
How to succeed in lab
AccessingCITI
Required Trainings
2. Compliance & technical documentation
+ Controlled Substance Information and Usage
+ Introduction to the Animal Facility
-80 Freezer
Anesthetic gas safety Training
Chemical Safety and Chemical Data MSDS sheets
Laser Safety
MTAs (Material Transfer Agreements)
Preparing for lab inspections
WhereDataIsStoredInLab
BioSafety information IBC protocol.
3. Helpful Information
WritingAScientificReview
+ Fellowships / Funding Opportunities
NSF GRFP
Get course credit for research
For non-lab members
Reviewing NIH grants with the new 2 Factor framework
Software Info
Computing and Analysis (software, hardware, etc.)
+ Automatic Cluster Cutting
KlustaKwik
+ KlustaSuite
SpikeInterface
+ CMBHOME
+ MATLAB
SettingUpMatlab
Importing Newly Recorded Data Into CMBhome
+ NML Data Analysis Framework
+ Running MATLAB on Karst
+ Spike Sorting and Cluster Cutting
+ SSH & SSHFS
Debugging-101
Manual scoring of rearing
Terminal Basics
DeeplabCut
DLC Installation
Guide for Building a DLC Network
Guide for Using a DLC Network
Troubleshooting DLC
DLC Papers
Installing DLC on HPC
Interactive mode DLC on HPC
HPC: Monitor how your job is running
Prepare HPC for batch jobs
Using DLC on HPC to train network or analyze videos
FreezerManagement
GitHub
High Performance Super Computing
MonitorRunningJobs
IDTxl
Intan RHD2000 Evaluation System
Lab Printer
NanoZ
NeuroStar Robotax
OpenEphys
RealSense Depth Cameras
Neuraldata Without Borders
'Bench' Techniques
Behavioral Training
+ 8-arm maze Retrieval Practice behavioral protocol
+ Mouse T-Maze behavioral protocol
Cleaning Optics
Electrophysiology Information (how-to, hardware, useful information)
+ Acute Recording During Anesthesia
+ eCube
+ Head Tracking with Bonsai
+ How to Measure Transfer Function
iEEG data handling
+ Open Ephys
+ WM-ADT-B1 channel mapping
Portgualboards to openpehys mapping
Histology
+ Cryostat Slicing
+ Microtome Slicing Protocol
+ ImmunoHistoChemistry
IHC: EYFP or GFP
IHC: ChAT
Histology recipes
4% Formaldehyde Solution in PBS
Intracranial Infusions
Intro to AAV's
Miscellaneous
Aliquoting Viruses
Genotyping Rats
HowToComputeChanceInThe8ArmMaze
Optogenetics
Recording Apparatus Preparation (drives, electrodes, etc.)
+ Hyperdrive Building Protocol
+ Microarray Building
Gold plating
Surgeries
+ .5 uL 7000 series syringe with glass micropipette adaptor
+ Aspiration for lens implant
+ Cannula Surgery
+ Intracranial infusions
+ RoboTax
+ Surgery
+ Urethane Administration
Bone wax Mineral oil mix for protecting optical fibers
Surgery Records
Maze control & upkeep
8-arm maze
Project Guides
AChOnCorrelations
ACh Rearing Project
+ACh & Theta as Mechanisms for Mode Switching: A Computational Model
AllenBO_vs_PID
BVC_EHREN_INNA_COLIN_COLLAB
+Effect of Dorsal Hippocampal Inactivation on the Retrieval Practice Effect
+Empirically Testing "A Proposed Function for Hippocampal Theta Rhythm"
+Hippocampal Place Cell Ensembles Remain Intact Despite Disrupted Phase Precession
HPC & PFC in TgF344-AD rats
+Is Theta a Traveling Wave in the Medial Entorhinal Cortex?
+Optogenetic Inactivation of the Medial Septum
+ Physical Neuronal Circuitry Tracing via Fluorophores
Rearing HPC inactivation
+SeaHeroQuest
+Testing the Cholinergic Hypothesis of Alzheimer's Disease
+Tau in AD
JetBall
Information Engines in Neural Sytems
Triangle Completion Task
TCT parts
Project paper task tracking
TCT Paper Admin
REM in ADvsCA1depth
VAMEpilot
Newman Memory Lab
Slack
Files
Member List
Outreach
Shop (Technical Support Group)
Newman Memory Lab
Maze control & upkeep
A general place to keep track of how to run and care for lab mazes
8-arm maze
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