TEAM MEMBERS:
Brianna Le (Former Project lead, graduated)
Afnan Abdulahi (Project lead)
Katie Geimer (Project lead)
Audrey Heile
Audrey Ott
PROJECT DESCRIPTION:
Background
This project takes a closer look at the interaction between the hippocampus and modulatory effects of acetylcholine which are both important for the encoding of new memories. A few concepts to understand before diving into more details of the project are:
Hippocampal theta rhythm is often viewed as a clocking mechanism that coordinates the spiking activity of neurons across he hippocampus to form coherent cell ensembles. Phase precession by place cells in dorsal CA1 of the hippocampus, which is a process thought to arise from this clocking, was previously shown to be degraded under the influence of a cholinergic antagonist called scopolamine (Newman E et al, 2017) .This was seen while looking at individual place cells within the hippocampus. Are ensembles of these cells similarly affected? The next few sections will outline the the questions related to this overarching question that we are attempting to answer through various sequential projects .
Cholinergic antagonist reduced phase precession of spiking relative to theta- is this effect coherent across cells?
Data collection and analysis is complete, paper in progress
Results indicate that coherence across cell ensembles- cell ensembles were intact after cholinergic blockade despite the loss of temporal coding
Since the effect is coherent- then what is causing the loss of phase precession?
Looks at what is encoded in neural ensembles and is there a change in neural ensembles and is there a change in the content they are encoding?
Experiment currently in progress
If content changes- what is the mechanism behind the change?
Considers relationship between effects and gamma
Implications toward entorhinal cortex and hippocampal CA1 coupling
Methods
This is an electrophysiology project, meaning we build electrodes, implant them into the brain, record data during a behavioral task, then complete subsequent data analysis. The two types of data we collect that are important to understand before reading further are:
Local field potential (LFP)
'Spiking data' otherwise known as action potentials
The timeline of the methods follows:
1. Building recording apparatus & surgical implantation
64 and 96 channel multi-screw hyperdrive constructed and loaded with 16-24 independently movable 4-channel electrodes
Bundle of ~1.8 mm wide
dHPC coordinates: 3-3.5 AP, 2-2.5 ML
2. Electrode positioning
Post-surgery, electrodes were stepped down through a process called turning to hippocampal CA1
3. Animal training and data collection
Before implantation, rats are trained to collect rewards around a circle track
Implanted rats then collect rewards around the circle track while recording LFP and spiking data
Baseline trial is collected without injection
injection trial is taken (alternates between saline and scopolamine trials)
Recovery trial is taken after injection has worn off
4. Spike Sorting
Automatic and manual cluster-cutting is performed to finalize and sort spiking data before analysis
5. Data Analysis
Different analyses are completed for each phase of the project, though generally concerned with looking at temporal and spatial coding of cells
Five core papers to understand the project: