+Optogenetic Inactivation of the Medial Septum

TEAM MEMBERS:

• • Dylan Layfield (Project Lead)

  • Blake Schritter 

ANALYSIS PIPELINE: 

All code/scripts used for this project is located either in 

1. D:\NewmanLab Dropbox\Ehren Newman\docs (1)\docs_Dylan\Code

or

2.  D:\Dropbox (NewmanLab)\scripts\projects\ChR2OnCA1depthLFP\scripts

or

3. D:\Dropbox (NewmanLab)\scripts\utils

Getting data ready for analysis:

1.  preparedata4use.m is the main script for preparing the data for analysis by updateSLs.m

2. updateSLs.m is the main script for epoching the data and running theta/gamma analyses

3. msoptoplots_modular.m is the main script for selecting analyzed data and plotting it. 

list of  matlab scripts/functions

preparedata4use.m

lightlabelMatlab_wROI.m

importRecording_guiSelect.m

addSyncPulses2Root.m

extractOptoPulses.m

parse8armBehaviors.m

appyTimebaseOffset.m

OverThresholdDetect.m

createSLFiles.m

updateSLs.m

checkEpochs2compare.m

behavioraldataplotsopto.m

msoptoplots_modular.m

SFN2019_panels.m

rearframecounter.m

Behavior: