2025/6/2 update
*corresponding author
#Authors are contributed equally
A-63. Mitamura, H.*, J. Takagi, Y. Itaya, S. Watanabe, and M. Kume (2024) Larger yellow-phase Japanese eels show short-range homing in a freshwater river. Journal of Fish Biology 106 (5): 1510-1519 (https://doi.org/10.1111/jfb.15815)
A-62. Takai, K.*, M. Kuroki, K. Shirai, M. Kume, H. Murakami, Y. Terashima, H. Togashi, H. Mitamura, and Y. Yamashita (2025) Spatial variability of growth improvement based on river use in Japanese seabass. Fisheries Research 285: 107376 (https://doi.org/10.1016/j.fishres.2025.107376)
A-61.Takai, K.*, M. Kuroki, K. Shirai, M. Kume, H. Murakami, Y. Terashima, H. Mitamura, and Y. Yamashita (2024) River-sea migration patterns of juvenile Japanese seabass influence migrations in subsequent stages. Estuarine, Coastal and Shelf Science 307: 108921 (https://doi.org/10.1016/j.ecss.2024.108921)
A-60.Medo, A.*, N. Ohte, H. Doi, K. Kamdee, K. Koba, N. Arai, Y. Mitsunaga, M. Kume, D. Kojima, T. Nose, A. Yokoyama, T. Viputhanumas, and H. Mitamura (2024) Trophic niche partitioning and intraspecific variation in food resource use in the genus Pangasianodon in a reservoir revealed by stable isotope analysis of multiple tissues. Journal of Fish Biology 105(3): 814–824. (https://doi.org/10.1111/jfb.15842)
A-59. Ikeya, K.*, and M. Kume (2024) Thirteen-year monitoring reveals annual feeding rhythm and prolonged fasting period of Mekong giant catfish (Pangasianodon gigas). Ichthyological Research 71(3): 378–387 (https://doi.org/10.1007/s10228-023-00944-y)
A-58. Kutzer, A., M. Kume, F. Kawai, Y. Terashima, E. Lavergne, O. J. Ooga, H. Mitamura, and Y. Yamashita* (2024) Trophic ecology of Japanese eels in small rivers of urban and agricultural areas. Fisheries Science 90(4): 565–579 (https://doi.org/10.1007/s12562-024-01784-z)
A-57. Medo, A.*, N. Ohte, K. Koba, N. Arai, Y. Mitsunaga, H. Nishizawa, M. Kume, K. Ikeya, T. Viputhanumas, K. Kamdee, I. Yamada, A. Yokoyama, H. Yamane, and H. Mitamura (2024) Trophic niche partitioning of Mekong giant catfish Pangasianodon gigas in a tropical reservoir: Evidence from stable isotope and fatty acid analyses. Limnology 25(2): 199–210 (doi.org/10.1007/s10201-024-00741-0 )
A-56. Kume, M.*#, J. Takagi#, Y. Dantsuji, T. Ito, Y. Yamashita, H. Mitamura, and T. Wada (2023) Tagging of age-0 flatfish with acoustic transmitters: Comparison of internal implantation versus external attachment. Environmental Biology of Fishes 106(10): 2011–2019 (https://doi.org/10.1007/s10641-023-01481-3)
A-55. Medo, A.*, N. Ohte, H. Kajitani, T. Nose, Y. Manabe, T. Sugawara, S. Onishi, A. S. Goto, K. Koba, N. Arai, Y. Mitsunaga, M. Kume, H. Nishizawa, D. Kojima, A. Yokoyama, T. Yamanaka, T. Viputhanumas, and H. Mitamura (2023) Striped catfish (Pangasianodon hypophthalmus) exploit organic sources across anaerobic decomposition- and primary photosynthetic production-based food chains. Scientific Reports 13: 13992. (https://doi.org/10.1038/s41598-023-41209-y ) Open access
A-54. 田嶋宏隆*・久米 学・小川真由・渡邊 俊・内山里美・内山耕蔵・大坪鉄治・古賀春美・亀井裕介・三田村啓理（2023）福岡県柳川市の掘割におけるニホンウナギの生息状況．水生生物 2023: AA2023-11．(https://doi.org/10.34394/aquaticanimals.2023.0_AA2023-11) Open access
(Tajima, H.*, M. Kume, M. Ogawa, S. Watanabe, S. Uchiyama, K. Uchiyama, T. Ootsubo, H. Koga, Y. Kamei, and H. Mitamura (2023) Occurrence and present status of Japanese eel in a canal “Horiwari” at Yanagawa City, Fukuoka Prefecture, Japan . Aquatic Animals 2023: AA2023-11) (in Japanese with English abstract)
A-53. Kume, M. *, Y. Yoshikawa, T. Tanaka, S. Watanabe, H. Mitamura, and Y. Yamashita (2022) Water temperature and precipitation stimulate small-sized Japanese eels to climb a low-height vertical weir. PLoS ONE 17(12): e0279617 (https://doi.org/10.1371/journal.pone.0279617) Open access
A-52. Lavergne, E.*, M. Kume, H. Ahn, Y. Henmi, Y. Terashima, F. Ye, S. Kameyama, Y. Kai, K. Kadowaki, S. Kobayashi, Y. Yamashita*, and A. Kasai (2022) Effects of forest cover on richness of threatened fish species in Japan. Conservation Biology 36(3): e13847 (https://doi.org/10.1111/cobi.13849). Open access プレスリリース
Featured in Yomiuri shinbun, Asahi Shinbun
A-51. Horiuchi, M., S. Hagihara, M. Kume, D. Chushi, Y. Hasegawa, H. Itakura, Y. Yamashita, S. Adachi, and S. Ijiri* (2022) Morphological and molecular gonadal sex differentiation in wild Japanese eel Anguilla japonica. Cells 11(9): 1554 (https://doi.org/10.3390/cells11091554) Open access
A-50. Kakioka, R., M. Kume, A. Ishikawa, S. Ansai, T. K. Hosoki, Y. Y. Yamasaki, A. J. Nagano, A. Toyoda, and J. Kitano* (2021) Genetic basis for variation in the number of cephalic pores in a hybrid zone between closely related species of goby, Gymnogobius breunigii and Gymnogobius castaneus. Biological Journal of the Linnean Society 133(1): 143–154 (https://doi.org/10.1093/biolinnean/blab033)
A-49. Kume, M. *, N. Nakayama, Y. Iwasaki, T. Hori, S. Watanabe, Y. Terashima, N. Arai, Y. Yamashita, and H. Mitamura (2021) River to river: First evidence of eel movement between distant rivers via the sea. Environmental Biology of Fishes 104(4): 529–533 (https://doi.org/10.1007/s10641-021-01090-y)
correction to Environmental Biology of Fishes 104(4): 529–533 (https://doi.org/10.1007/s10641-021-01108-5)
A-48. Noda, T.*, T. Wada, H. Mitamura, M. Kume, T. Komaki, T. Fujita, T. Sato, K. Narita, M. Yamada, A. Matsumoto, T. Hori, J. Takagi, A. Kutzer, N. Arai, and Y. Yamashita (2021) Migration, residency and habitat utilization by wild and cultured Japanese eels (Anguilla japonica) in a shallow brackish lagoon and inflowing rivers using acoustic telemetry. Journal of Fish Biology 98(2): 507–525 (https://doi.org/10.1111/jfb.14595)
Featured in Fukushima-Minpo, Fukushima-Minyu shinbun
A-47. Kume, M. *, E. Lavergne, H. Ahn, Y. Terashima, K. Kadowaki, F. Ye, S. Kameyama, Y. Kai, Y. Henmi, Y. Yamashita, and A. Kasai (2021) Factors structuring estuarine and coastal fish communities across Japan using environmental DNA metabarcoding. Ecological Indicators 121: 107216. (https://doi.org/10.1016/j.ecolind.2020.107216) Open access
A-46. Ravinet, M.*, M. Kume, A. Ishikawa, and J. Kitano* (2021) Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats. Journal of Evolutionary Biology 34(1): 114–127 (https://doi.org/10.1111/jeb.13664) Open access
A-45. Kakioka, R, S. Mori, T. Kokita, T.K. Hosoki, A.J. Nagano, A. Ishikawa, M. Kume, A. Toyoda, and J. Kitano* (2020) Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago. BMC Evolutionary Biology 20: 143 (https://doi.org/10.1186/s12862-020-01713-5) Open access
A-44. Ahn, H.*, M. Kume, Y. Terashima, F. Ye, S. Kameyama, M. Miya, Y. Yamashita, and A. Kasai (2020) Evaluation of biodiversity in estuaries using environmental DNA metabarcoding. PLoS ONE 15(10): e0231127 (https://doi.org/10.1371/journal.pone.0231127) Open access
A-43. Medo, A.*, H. Nishizawa, A. Yokoyama, M. Kume, Y. Mitsunaga, N. Arai, H. Yamane, K. Ikeya, T. Viputhanumas, and H. Mitamura (2020) Gut morphometry represents diet preference to indigestible materials in the largest fresh water fish, Mekong giant catfish (Pangasianodon gigas). Zoological Science 37(5): 444–449 (https://doi.org/10.2108/zs200047)
A-42. Kutzer, A.*, E. A. Lavergne, M. Kume, T. Wada, Y. Terashima, and Y. Yamashita (2020) Foraging behavior of yellow-phase Japanese eels between connected fresh- and brackish water habitats. Environmental Biology of Fishes 103(9): 1061–1077 (https://doi.org/10.1007/s10641-020-01002-6)
A-41. Nagayama, S.*, M. Kume, M. Oota, M. Mizuhima, and S. Mori (2020) Common coypu predation on unionid mussels and terrestrial plants in an invaded Japanese river. Knowledge and Management of Aquatic Ecosystems 421: 37 (https://doi.org/10.1051/kmae/2020029) Open access
A-40. Kume, M. *, Y. Terashima, F. Kawai, A. Kutzer, T. Wada, and Y. Yamashita (2020) Size-dependent changes in habitat use of Japanese eel Anguilla japonica during the river life stage. Environmental Biology of Fishes 103(3): 269–281 (https://doi.org/10.1007/s10641-020-00957-w)
A-39. Kume, M. *, Y. Terashima, T. Wada, and Y. Yamashita (2019) Longitudinal distribution and microhabitat use of young Japanese eel Anguilla japonica in a small river flowing through paddy areas. Journal of Applied Ichthyology 35(4): 876–883 (https://doi.org/10.1111/jai.13911)
A-38. Ishikawa, A., N. Kabeya, K. Ikeya, R. Kakioka, J. N. Cech, N. Osada, M. C. Leal, J. Inoue, M. Kume, A. Toyoda, A. Tezuka, A. J. Nagano, Y. Y. Yamasaki, Y. Suzuki, T. Kokita, H. Takahashi, K. Lucek, D. Marques, Y. Takehana, K. Naruse, S. Mori, O. Monroig, N. Ladd, C. J. Schubert, B. Matthews, C. L. Peichel, O. Seehausen, G. Yoshizaki, and J. Kitano* (2019) A key metabolic gene for recurrent freshwater colonization and radiation in fishes. Science 364(6443): 886–889 (https://doi.org/10.1126/science.aau5656)
Featured in Asahi-shinbun, Zaikei-shinbun, Gifu-shinbun etc.
A-37. Hosoki, T., S. Mori, S. Nishida, M. Kume, T. Sumi, and J. Kitano* (2019) Diversity in gill raker number and diets among stickleback populations in novel habitats created by the 2011 Tōhoku earthquake and tsunami. Evolutionary Ecology Research 20(2): 213–230.
correction to Evolutionary Ecology Research 20(2): 213–230 (pdf)
Featured in Asahi-shinbun
A-36. Kume, M.*, S. Mori, J. Kitano, T. Sumi, and S. Nishida (2018) Impact of the huge 2011 Tohoku-oki tsunami on the phenotypes and genotypes of Japanese coastal threespine stickleback populations. Scientific Reports 8: 1684 (https://doi.org/10.1038/s41598-018-20075-z) Open access
One of the top 100 read ecology papers in 2018
Featured in NHK NEWS WEB (NHK Morioka), Mainichi-Shinbun, Kyodo, etc....
A-35. 原田真実・久米 学*・望岡典隆・田村勇司・神崎東子・橋口俊也・笠井亮秀・山下 洋 (2018) 大分県国東半島・宇佐地域の伊呂波川と桂川に設置したウナギ石倉かごにより採集されたニホンウナギと水生動物群集．日本水産学会誌 84(1): 45–53 (https://doi.org/10.2331/suisan.17-00032) Free download
(Harada, M., M. Kume*, N. Mochioka, Y. Tamura, T. Kanzaki, S. Hashiguchi, A. Kasai, and Y. Yamashita (2018) Japanese eel Anguilla japonica and aquatic animals collected with Ishi-kura net in the Iroha and Katsura Rivers, Oita Prefecture, Japan. Nippon Suisan Gakkaishi 84(1): 45–53) (in Japanese with English abstract)
A-34. 久米 学*・和田敏裕・高木淳一・堀 友彌・三田村啓理・荒井修亮・山下 洋 (2017) 福島県松川浦におけるクロホシマンジュウダイ幼魚の初記録．魚類学雑誌 64(2): 201–205 (https://doi.org/10.11369/jji.64-201) Free download
(Kume, M. *, T. Wada, J. Takagi, T. Hori, H. Mitamura, N. Arai, and Y. Yamashita (2017) First record of juvenile spotted scat Scatophagus argus from the Matsukawa-ura lagoon, Fukushima Prefecture, Japan. Japanese Journal of Ichthyology 64(2): 201–205) (in Japanese with English abstract)
A-33. Kume, M.*, and J. Kitano (2017) Genetic and stable isotope analyses of threespine stickleback from the Bering and Chukchi seas. Ichthyological Research 64(4): 478–480 (https://doi.org/10.1007/s10228-017-0580-9)
A-32. Ishikawa, A., M. Kusakabe, M. Kume, and J. Kitano* (2016) Comparison of freshwater tolerance during spawning migration between two sympatric Japanese marine threespine stickleback species. Evolutionary Ecology Research 17(4): 525–534.
A-31. Ravinet, M.*, N. Takeuchi, M. Kume, S. Mori, and J. Kitano* (2014) Comparative analysis of Japanese three-spined stickleback clades reveals the Pacific Ocean lineage has adapted to freshwater environments while the Japan Sea has not. PLoS ONE 9(12): e112404 (https://doi.org/10.1371/journal.pone.0112404) Open access
A-30. Negishi, J. N.*, H. Tamaoki, N. Watanabe, S. Nagayama, M. Kume, Y. Kayaba, and M. Kawase (2014) Imperiled freshwater mussels in drainage channels associated with rare agricultural landscape and diverse fish communities. Limnology 15(3): 237–247 (https://doi.org/10.1007/s10201-014-0430-7)
A-29. Negishi, J. N.*, K. Katsuki, M. Kume, S. Nagayama, and Y. Kayaba (2014) Terrestrialization alters organic matter dynamics and habitat quality for freshwater mussels (Unionoida) in floodplain backwaters. Freshwater Biology 59(5): 1026–1038 (https://doi.org/10.1111/fwb.12325)
A-28. Kume, M., J. N. Negishi*, S. Sagawa, T. Miyashita, S. Aoki, T. Ohmori, S. Sanada, and Y. Kayaba (2014) Winter fish community structures across floodplain backwaters in a drought year. Limnology 15(2): 109–115 (https://doi.org/10.1007/s10201-013-0421-0)
A-27. Yoshida, K., T. Makino, K. Yamaguchi, S. Shigenobu, M. Hasebe, M. Kawata, M. Kume, S. Mori, C.L. Peichel, A. Toyoda, A. Fujiyama, and J. Kitano* (2014) Sex chromosome turnover contributes to genomic divergence between incipient stickleback species. PLoS Genetics 10(3): e1004223 (https://doi.org/10.1371/journal.pgen.1004223) Open access
Featured in JST Science Portal, BRH Journal, and FM Mishima
A-26. Ishikawa, A., N. Takeuchi, M. Kusakabe, M. Kume, S. Mori, H. Takahashi, and J. Kitano* (2013) Speciation in ninespine stickleback: reproductive isolation and phenotypic divergence among cryptic species of Japanese ninespine stickleback. Journal of Evolutionary Biology 26(7): 1417–1430 (https://doi.org/10.1111/jeb.12146) Free download
A-25. Negishi, J. N.*, S. Nagayama, M. Kume, S. Sagawa, Y. Kayaba, and Y. Yamanaka (2013) Unionoid mussels as an indicator of fish communities: a conceptual framework and empirical evidence. Ecological Indicators 24(1): 127–137 (http://doi.org/10.1016/j.ecolind.2012.05.029)
A-24. 久米 学*・森 誠一（2012）【意見】水田・水路生態系における魚類研究の発展に向けて．応用生態工学 15(2): 287–291 (https://doi.org/10.3825/ece.15.287) Free download
(Kume, M.*, and S. Mori（2012）Toward the development of fish study in agro-ecosystem. Ecology and Civil Engineering 15(2): 287–291) (in Japanese)
A-23. 久米 学*・森 誠一（2012）【序文】水田・水路生態系における魚類研究の現状と課題：特集を企画するにあたって．応用生態工学 15(2): 269–271 (https://doi.org/10.3825/ece.15.269) Free download
(Kume, M.*, and S. Mori（2012）Introduction of present status and future problems of fish study in agro-ecosystem. Ecology and Civil Engineering 15(2): 269–271) (in Japanese)
A-22. 永山滋也*・根岸淳二郎・久米 学・佐川志朗・塚原幸治・三輪芳明・萱場祐一（2012）農業用の水路における季節と生活史段階に応じた魚類の生息場利用．応用生態工学 15(2): 147–160 (https://doi.org/10.3825/ece.15.147) Free download
(Nagayama, S.*, J. N. Negishi, M. Kume, S. Sagawa, K. Tsukahara, Y. Miwa, and Y. Kayaba（2012）Habitat use by fish according to seasons and life stages in small perennial agricultural canals. Ecology and Civil Engineering 15(2): 147–160) (in Japanese with English abstract)
A-21. 久米 学*・小野田幸生・根岸淳二郎・佐川志朗・永山滋也・萱場祐一（2012）木曽川氾濫原水域における特定外来生物ヌートリア（Myocastor coypus）によるイシガイ科二枚貝類の食害．陸水生物学報 27: 41–47．(pdf)
(Kume, M.*, Y. Onoda, J. N. Negishi, S. Sagawa, S. Nagayama, and Y. Kayaba（2012）Feeding damage by exotic species, nutria (Myocastor coypus), to unionid mussels in a floodplain water-body of the Kiso River, Japan. Biology of Inland Waters 27: 41–47) (in Japanese with English abstract)
Featured in みのもんたの朝ズバッ！(TV show)
A-20. Negishi, J. N.*, S. Sagawa, Y. Kayaba, S. Sanada, M. Kume, and T. Miyashita (2012) Mussel responses to flood pulse frequency: the importance of local habitat. Freshwater Biology 57(7): 1500–1511 (https://doi.org/10.1111/j.1365-2427.2012.02803.x)
A-19. 上野篤史*・金尾滋史・久米 学・近 雅博（2012）滋賀県犬上川下流域におけるハリヨGasterosteus aculeatus microcephalus の季節消長と生息場所利用．地域自然史と保全 34(1): 3–12．
(Ueno, A.*, S. Kanao, M. Kume, and M. Kon（2012）Habitat use of a land-locked threespine stickleback “Hariyo” at the lower region of the Inukami River, Shiga Prefecture, Japan. Bulletin of Kansai Organization for Nature Conservation 34(1): 3–12) (in Japanese with English abstract)
A-18. Adachi, T., A. Ishikawa, S. Mori, W. Makino, M. Kume, M. Kawata, and J. Kitano* (2012) Shifts in morphology and diet of non-native sticklebacks introduced into Japanese crater lakes. Ecology and Evolution 2(6): 1083–1098 (https://doi.org/10.1002/ece3.234) Open access
A-17. Negishi, J. N.*, S. Sagawa, S. Sanada, M. Kume, T. Ohmori, T. Miyashita, and Y. Kayaba (2012) Using airborne scanning laser altimetry (LiDAR) to estimate surface connectivity of floodplain water bodies. River Research and Applications 28(2): 258–267 (https://doi.org/10.1002/rra.1442)
A-16. Ikeya, K.*, and M. Kume (2011) Seasonal feeding rhythm associated with fasting period of Pangasianodon gigas : Long-term monitoring in an aquarium. Zoological Science 28(8): 545–549 (https://doi.org/10.2108/zsj.28.545) Free download
2012 Zoological Science Award
Featured in Chunichi-Shinbun
A-15. 小野田幸生*・佐川志朗・上野公彦・尾崎正樹・久米 学・相川隆生・森 照貴・萱場祐一（2011）流速の増大がオイカワによる水際の緩流域利用頻度に及ぼす影響．河川技術論文集 17: 197–202．
(Onoda, Y.*, S. Sagawa, K. Ueno, M. Ozaki, M. Kume, T. Aikawa, T. Mori, and Y. Kayaba（2011）Effect of increase in thalweg velocity on usage frequency of low-velocity zone near shoreline by pale chub. Advances in River Engineering 17: 197–202) (in Japanese with English abstract)
A-14. Kume, M.* (2011) Clutch and egg sizes in two migratory forms of threespine stickleback Gasterosteus aculeatus in eastern Hokkaido, Japan. Zoological Studies 50(3): 309-314. (pdf) Open access
A-13. 久米 学*（2010）イトヨ日本海型と太平洋型の巣構造（予報）．陸水生物学報 25: 1–6．(pdf)
(Kume, M.*（2010）Preliminary study on nest characteristics in the Japan Sea and Pacific Ocean forms of threespine stickleback. Biology of Inland Waters 25: 1–6) (in Japanese with English abstract)
A-12. Kume, M.*, J. Kitano, S. Mori, and T. Shibuya (2010) Ecological divergence and habitat isolation between two migratory forms of Japanese threespine stickleback (Gasterosteus aculeatus). Journal of Evolutionary Biology 23(7): 1436–1446 (https://doi.org/10.1111/j.1420-9101.2010.02009.x) Free download
A-11. 久米 学*（2010）北海道東部別寒辺牛川水系に生息するイトヨ日本海型と太平洋型の繁殖期．魚類学雑誌 57(1): 63-67 (https://doi.org/10.11369/jji.57.63) Free download
(Kume, M.*（2010）Breeding season in the Japan Sea and Pacific Ocean forms of threespine stickleback Gasterosteus aculeatus in the Bekanbeushi River system of eastern Hokkaido, Japan. Japanese Journal of Ichthyology 57(1): 63–67) (in Japanese with English abstract)
A-10. Kume, M.*, and S. Mori (2009) Sea-run migratory behaviour in the Japan Sea form of three-spined stickleback Gasterosteus aculeatus in the tidal pool of eastern Hokkaido Island, Japan. Journal of Fish Biology 75(12): 2845–2850 (https://doi.org/10.1111/j.1095-8649.2009.02472.x)
A-9. 久米 学*・鳥居千晴（2009）北海道東部におけるイトヨ日本海型と太平洋型の摂餌生態（予報）．陸水生物学報 24: 17–20．(pdf)
(Kume, M.*, andC.Torii（2009）Preliminary report on feeding ecology in the Japan Sea and Pacific Ocean forms of threespine stickleback in eastern Hokkaido, Japan. Biology of Inland Waters 24: 17–20.) (in Japanese with English abstract)
A-8. Kitano, J., J. A. Ross, S. Mori, M. Kume, F. C. Jones, Y. F. Chan, D. M. Absher, J. Grimwood, J. Schmutz, R. M. Myers, D. M. Kingsley, and C. L. Peichel* (2009) A role for a neo-sex chromosome in a stickleback speciation. Nature 461 (7267): 1079–1083 (https://doi.org/10.1038/nature08441)
Featured in Nature News, Nature Making the paper, Nature podcast, Leading Edge in Cell, Kyodo, etc....
A-7. 久米 学*・鳥居千晴（2009）北海道東部の湿原性河川，別寒辺牛川支流大別川に生息する淡水魚類の春季・夏季における出現パターン．伊豆沼・内沼研究報告 3: 65–72．(pdf)
(Kume, M.*, and C. Torii（2009）Occurrence patterns of freshwater fish during spring-summer period in the Ohbetsu River, the tributary of the Bekanbeushi River, flowing through wetland, eastern Hokkaido, Japan. Izunuma-Uchinuma Wetland Researches 3: 65–72.) (in Japanese with English abstract)
A-6. 鳥居千晴*・原田泰志・久米 学（2008）三重県雲出川水系の一支流におけるネコギギの生息状況．陸水生物学報 23: 43–51．(pdf)
(Torii, C.*, Y. Harada, and M. Kume（2008）Distribution and physical habitat characteristics of the endangered bagrid catfish Pseudobagrus ichikawai in a tributary of the Kumozu River, Mie Prefecture, Japan. Biology of Inland Waters 23: 43–51) (in Japanese with English abstract)
A-5. 久米 学*（2008）千葉県夷隅川と栗山川から得られたイトヨ日本海型：分布南限個体群の可能性について．陸水生物学報 23: 21–26．(pdf)
(Kume, M.*（2008）Japan Sea form of threespine stickleback, Gasterosteus aculeatus, from the Isumi and Kuriyama Rivers in Chiba Prefecture: possibility of the southernmost population. Biology of Inland Waters 23: 21–26.) (in Japanese with English abstract)
A-4. 久米 学*（2008）北海道東部，厚岸湖・別寒辺牛川水系下流部の淡水魚類相．陸水生物学報 23: 15–19．(pdf)
(Kume, M.*（2008）Freshwater fish fauna in the lower region of the Bekanbeushi River. Biology of Inland Waters 23: 15–19) (in Japanese with English abstract)
A-3. Kitamura, T.*, M. Kume, H. Takahashi, and A. Goto (2006) Juvenile bimodal length distribution and sea-run migration of the lower modal group in the Pacific Ocean form of three-spined stickleback. Journal of Fish Biology 69 (4): 1245–1250 (https://doi.org/10.1111/j.1095-8649.2006.01184.x)
A-2. Kume, M.*, T. Kuwahara, T. Arai, M. Okamoto, and A. Goto (2006) A part of the Japan Sea form of the threespine stickleback, Gasterosteus aculeatus, spawns in the seawater tidal pools of western Hokkaido Island, Japan. Environmental Biology of Fishes 77 (2): 169–175 (https://doi.org/10.1007/s10641-006-9068-6)
A-1. Kume, M.*, T. Kitamura, H. Takahashi, and A. Goto (2005) Distinct spawning migration patterns in sympatric Japan Sea and Pacific Ocean forms of threespine stickleback Gasterosteus aculeatus. Ichthyological Research 52 (2): 189–193 (https://doi.org/10.1007/s10228-005-0269-3)
B-1. Kitano, J.*, A. Ishikawa, M. Kume, and S. Mori (2012) Physiological and genetic basis for variation in migratory behavior in three-spined stickleback, Gasterosteus aculeatus. Ichthyological Research 59(4): 293–303 (https://doi.org/10.1007/s10228-012-0289-8) Open access
C-9. 久米 学*・鬼倉徳雄（2017）2017 年度日本魚類学会シンポジウム「淡水魚保全における河川行政との連携」の開催報告．魚類学雑誌 64(2): 239–240．
C-8. 久米 学*・森 誠一・北野 潤・西田翔太郎（2014）2．「湧水に生きる水生生物：大槌の湧水生態系を構成する生物相」1）～4）水質・動物関連．イトヨ湧水調査研究事業報告書「大槌町の郷土財としての湧水環境に関する研究」，pp25–49．
C-7. 小野田幸生*・佐川志朗・上野公彦・尾崎正樹・久米 学・相川隆生・森 照貴・萱場祐一（2011）魚が水際部にできる流れの遅い場所を必要とするのは、どんな時でしょうか？ 自然共生研究センター活動レポート－平成22年度の成果から－，pp10–11．
C-6. 上野公彦*・久米 学・萱場祐一（2011）護岸はどのような色や形状であれば、周囲の景観と調和するでしょうか？ 自然共生研究センター活動レポート－平成22年度の成果から－，pp6–7．
C-5. 佐川志朗*・萱場祐一・久米 学・森 誠一（2011）イタセンパラを育む木曽川氾濫原生態系の理解と再生への取り組み．土木技術資料 53(11): 6–9．
(Sagawa, S.*, Y. Kayaba, M.Kume, and S. Mori（2011) Comprehension of floodplain in the Kiso River and its restoration project. Civil Engineering Journal 53(11): 6–9) (in Japanese)
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C-4. 久米 学*（2010）どうして冠水しやすいワンドでは、魚類の多様性が高いのでしょうか？ 自然共生研究センター活動レポート－平成21年度の成果から－，pp12–13．
C-3. 相川隆生*・佐川志朗・久米 学・萱場祐一（2010）ワンドの冠水頻度や底質の違いは、水生生物の定着に影響するでしょうか？ 自然共生研究センター活動レポート－平成21年度の成果から－，pp10–11．
C-2. 久米 学*・北野 潤・森 誠一（2010）繁殖場所への適応–生態的分岐はイトヨの種分化を促進する–．月刊海洋 42 (6): 330–336．
(Kume, M.*, J. Kitano and S. Mori（2010）Adaptation to breeding habitat: ecological divergence facilitates speciation in threespine stickleback. Monthly Kaiyo 42(6): 330–336) (in Japanese)
C-1. 石川正樹*・久米 学（2010）イトヨ日本海型と太平洋型の高水温耐性実験．ホシザキグリーン財団研究報告 13: 265–268．
(Ishikawa, M.*, and M. Kume（2010）A study of thermal resistance and upper lethal temperature limits in three-spined stickleback, Gasterosteus aculeatus L. Bulletin of Hoshizaki Green Funding 13: 265–268) (in Japanese with English abstract)
D-3. Kume, M.*, and E. Lavergne (2022) Fish diversity of estuaries revealed by environmental DNA. pp.143-158. In "Fish Diversity of Japan: Evolution, Zoogeography, and Conservation" (Kai, Y., H. Motomura and K. Matsuura eds), Springer, Singapore. (https://doi.org/10.1007/978-981-16-7427-3_9)
D-2. 久米 学*（2017）【コラム8】タイリクバラタナゴの苦い思い出．pp50；【コラム17】ハリヨの現状と保全．pp140，「岐阜県の魚類」（向井貴彦編著），岐阜新聞社．
(Kume, M.* （2017）[column8] Memory of Rhodeus ocellatus ocellatus．pp50; [column17] Present status and conservation of land-locked threespine stickleback (Gasterosteus aculeatus subsp.)．pp140, In "Fishes of Gifu" (Mukai, T., ed.)，Gifu Shinbun) (in Japanese)
D-1. 久米 学*・北村武文（2003）同所域におけるイトヨ遺伝的2型の繁殖生態と生殖的隔離．pp144–153,「トゲウオの自然史‐多様性の謎とその保全‐」（後藤 晃・森 誠一 編），北海道大学図書刊行会．
(Kume, M.*, and T. Kitamura（2003）Breeding ecology and reproductive isolation of two genetic forms of threespine stickleback in sympatry．pp144–153, "Natural history of sticklebacks"(Goto, A. and S. Mori, eds.)，Hokkaido University Press) (in Japanese)