Commentaires
Cette phylogénie semble faire consensus, excepté pour le groupe frère des Clupéocéphales. Les relations internes aux Eutéléostéens ne sont pas claires.
Références
Austin CM, Tan MH, Croft LJ, Hammer MP & Gan HM (2015) Whole genome sequencing of the Asian arowana (Scleropages formosus) provides insights into the evolution of ray-finned fishes. Genome Biology and Evolution, 7: 2885-2895
Faircloth BC, Sorenson L, Santini F & Alfaro ME (2013) A phylogenomic perspective on the radiation of ray-finned fishes based upton targeted sequencing of ultraconserved elements (UCEs). PLoS ONE, 8: e65923
Hughes LC, Ortí G, Huang Y, Sun Y, Baldwin CC, Thompson AW, Arcila D, Betancur-R R, Li C, Becker L et al. (2018) Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data. Proceedings of the National Academy of Sciences of the United States of America, 115: 6249-6254
Hughes LC, Ortí G, Saad H, Li C, White WT, Baldwin CC, Crandall KA, Arcila D & Betancur-R R (2020) Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics. Molecular Ecology Resources, doi: 10.1111/1755-0998.13287
Irisarri I, Baurain D, Brinkmann H, Delsuc F, Sire JY, Kupfer A, Petersen J, Jarek M, Meyer A, Vences M & Philippe H (2017) Phylotranscriptomic consolidation of the jawed vertebrate timetree. Nature Ecology & Evolution, 1: 1370-1378
Martin KJ & Holland PW (2017) Diversification of Hox gene clusters in Osteoglossomorph fish in comparison to other Teleosts and the spotted gar outgroup. Journal of Experimental Zoology, 328: 638-644
Sallan LC (2014) Major issues in the origins of ray-finned fish (Actinopterygii) biodiversity. Biological Reviews, 89: 950-971
Shen XX, Hittinger CT & Rokas A (2017) Contentious relationships in phylogenomic studies can be driven by a handful of genes. Nature Ecology & Evolution, 1: 126
Straube N, Li C, Mertzen M, Yuan H & Moritz T (2018) A phylogenomic approach to reconconstruct interrelationships of main clupeocephalan lineages with a critical discussion of morphological apomorphies. BMC Evolutionary Biology, 18: 158
Thompson AW, Hawkins MB, Parey E, Wcisel DJ, Ota T, Kawasaki K, Funk E, Losilla M, Fitch OE, Pan Q et al. (2021) The bowfin genome illuminates the developmental evolution of ray-finned fishes. Nature Genetics, doi: 10.1038/s41588-021-00914-y
Zou M, Guo B, Tao W, Arratia G & He S (2012) Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii). Scientific Reports, 2: 665