Y5.Transcriptoma

Analisis rutas metabolicas

https://metacyc.org

Atlas de expresión

https://www.ebi.ac.uk/gxa/home

Usemos Galaxy

Galaxy

-Upload your data

-NGS Toolbox

-NGS: QC and manipulation

-FastQC: ReadQC reports

Click Execute

Click en el reporte del ojo

Para instalar el FastQQC en MAC requiere el Java de MAC https://support.apple.com/kb/DL1572?locale=en_US

Good results

https://www.bioinformatics.babraham.ac.uk/projects/fastqc/good_sequence_short_fastqc.html

Bad result

https://www.bioinformatics.babraham.ac.uk/projects/fastqc/bad_sequence_fastqc.html

Para instalar el RobiNA

http://mapman.gabipd.org/robin

-Se debe abrir desde content

Promotores

http://plantpan2.itps.ncku.edu.tw/promoter.php

http://www.softberry.com/berry.phtml?topic=tssp&group=programs&subgroup=promoter

Qué significa cada pestaña del FastQC

http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/

https://trufa.ifca.es/web/

https://trufa.ifca.es/web/howto

https://www.sanger.ac.uk/science/tools/artemis

https://www.ebi.ac.uk/~nf/hts_mappers/

SAM-BAM

https://bioinformatics.ca/assets/site/files/RNASeq_Module2_Lecture.pdf