PUBLICAÇÕES

RESUMO: Um debate central sobre a conservação da biodiversidade é se os orçamentos escassos devem ser investidos em táxons criticamente ameaçados ou naqueles com maiores chances de sobreviver devido ao tamanho maior da população. Abordar o destino de táxons extremamente afunilados é uma maneira ideal de testar essa ideia, mas os casos empíricos são surpreendentemente limitados. A reintrodução do extinto mutum alagoano (Pauxi mitu) por cientistas brasileiros em setembro de 2019 somados aos outros dois casos conhecidos de sobrevivência a gargalos de apenas dois ou três indivíduos. Exploramos as razões pelas quais essa espécie sobreviveu e relatamos como os investimentos para resgatar o mutum alagoano resultaram na proteção de muitos outros táxons, sugerindo que diante do dramático número de extinções esperadas para o Antropoceno, a integração deve prevalecer sobre um escolha.

RESUMO: Species have been lost at unprecedented rates. Because only a small fraction of the threatened taxa have been managed under human care, contrasting the characteristics of taxa that have, and have not been targeted to ex situ conservation can reveal the reach of this conservation strategy, and can indicate its main challenges. Here we investigated whether the level of threat, diet, body mass, phylogeny, and previous presence in captivity due to non-conservation purposes could be potential parameters accounting for the occurrence of Brazilian threatened avian species and subspecies in ex situ conservation facilities and for their eligibility to organized ex situ conservation plans. Using Bayesian phylogenetic comparative models we found positive effects of body mass and phylogeny, and a negative effect of insectivorous diet in the occurrence of the taxa in non-conservation facilities. The previous presence in non-conservation facilities, together with phylogeny, diet, and body mass were the main parameters accounting for the occurrence of the threatened taxa in ex situ conservation facilities, and the previous presence in non-conservation facilities and phylogeny explained the existence of organized ex situ conservation plans. This is evidence that conservation breeding facilities have mostly harbored threatened confiscated birds than choosing them based on scientific criteria. We suggest that investing in the development of husbandry techniques, especially for insectivorous passerines, and choosing taxa based on scientific criteria are important challenges that should be on the agenda of conservation managers.

RESUMO: A determinação dos riscos relativos de extinção dos táxons ameaçados é importante para o delineamento de ações de recuperação e para o direcionamento dos investimentos em conservação. O Brasil é o país que possui o maior número de táxons ameaçados de aves, no entanto, informações sobre aspectos demográficos são inexistentes para a maioria deles. Neste trabalho são apresentadas estimativas de densidades populacionais, baseadas no método de amostragem por distância, para três táxons ameaçados de extinção endêmicos do Centro de Endemismo Pernambuco (CEP), a região mais degradada de toda a Mata Atlântica. Os táxons analisados foram a choca-lisa Thamnophilus aetiops distans (Ameaçada), o flautim-marrom Schiffornis turdina intermedia (Vulnerável) e a maria-de-barriga-branca Hemitriccus griseipectus naumburgae (Vulnerável). Os números de indivíduos/ha estimados para um fragmento de floresta de aproximadamente 1000 ha foram respectivamente 0,21, 0,14 e 0,73. Com isto, foi possível confirmar a premissa de que mesmo táxons classificados em uma mesma categoria de ameaça com base apenas em informações de hábitats podem possuir densidades populacionais bastante divergentes e portanto diferentes graus de riscos de extinção. Embora as densidades populacionais possam variar entre fragmentos, a extrapolação destes dados para toda a área do CEP confirmou a classificação de Vulnerável para o flautim-marrom e indicou as categorias Vulnerável e Pouco Preocupante para a choca-lisa e para a maria-de-barriga-branca, sugerindo que para as duas últimas, as classificações atuais baseadas nos tamanhos das suas Áreas de Ocupação (Ameaçada e Vulnerável) devem prevalecer.

RESUMO: The Pernambuco Endemism Center (PEC) is the most fragmented and degraded tract of the Atlantic Forest, considered to be a hotspot within a hotspot. Recent bird extinctions and the high number of endangered taxa have called the attention of conservation practitioners all over the world to this area. Among the most vulnerable groups of birds are the insectivorous passerines of the forest understory, yet empirical information on demography and habitat requirements are unavailable for these taxa. Here, we provide population density estimates and microhabitat selection information for two endangered insectivorous passerines endemic to the PEC, the Pernambuco Fire-eye, Pyriglena pernambucensis, and the Black-cheeked Gnateater, Conopophaga melanops nigrifrons. Distance-sampling estimates resulted in population densities of 0.15 and 0.35 individuals/ha, respectively, in an Atlantic Forest fragment of approximately 1000 ha. Extrapolations of population densities to 39 fragments where the occurrence of these taxa was confirmed resulted in population estimates of 4936 individuals for the Pernambuco Fire-eye and 12,679 individuals for the Black-cheeked Gnateater, but these may be underestimates because other fragments where they could potentially occur were never surveyed. Although extrapolating data from only one fragment to other areas is problematic, these are the first rough minimum population size estimates for birds from the PEC. Microhabitat preference analyses revealed that both species selected sites with denser forest understory vegetation, which is associated with areas in regeneration. This is evidence that these taxa can tolerate certain levels of habitat disturbance and that their limited distributions and habitat loss may be more important causes of threat than habitat requirements. In the face of ongoing PEC fragmentation, our data will serve to parameterize other studies and may contribute to practical conservation policies.

RESUMO: The northeast Brazilian state of Alagoas harbors a rather diverse, and one of the world’s most threatened, avifauna. However, the knowledge about its avifauna is currently scattered on several publications and the state’s birds have never been comprehensively assembled into a checklist. To fill this shortfall, we present here the first critical review of all available bird records for the state of Alagoas. We present a list of 520 bird species recorded in the state, of which 503 are supported by documentary evidence. We also comment on the distribution, migratory movements, taxonomy and conservation of the region’s avifauna and correct previous misidentified or invalid records for the state.

RESUMO: Greening is the increase in vegetation biomass linked to raises in CO2 emissions, nitrogen deposition, climate warming, and changes in land cover. Because greening implies land carbon storage, it can contribute to buffering climate changes. While tropical forests are responsible for an important amount of global greening, these environments have been increasingly fragmented, and fragments are thought to lose biomass over time. However, the interferences of forest fragmentation in greening and browning (decrease in vegetation biomass) balance have been an overlooked aspect of greening studies. Furthermore, the saturation of the vegetation indices often used for biomass assessment has been an important challenge for greening studies in dense tropical forests. Here we used Google Earth Engine to address greening and browning trends over the last 35 years for fragments of different sizes from a tropical hotspot, the Atlantic Forest of northeastern Brazil, and we contrasted the results obtained from two vegetation indices, the traditional NDVI, and the recently developed kNDVI. Despite the highly advanced fragmentation level, greening predominated over browning independently of fragment size (<10 ha, 10–100 ha, 100–1000 ha, and >1000 ha), occurring more frequently but with lower intensity in the larger patches. Although these tendencies did not change with the use of different vegetation indices, kNDVI proved to be more efficient to detect browning, to identify the different classes of intensity in both greening and browning, and for capturing the extreme greening and browning levels, confirming its lower saturation in relation to NDVI. Climate and anthropogenic effects on vegetation were found only for small and isolated patches of pixels. Our results contradicted the prediction of a continuous unidirectional trend of biomass loss in highly fragmented habitats and revealed that although tropical forest fragments may retain less biomass than continuous forest tracts they may act as carbon sinks, and this can be another important reason for their conservation.

RESUMO: The knowledge of the diversity, richness, and distribution of tropical organisms are poorly understood, and a plethora of new species are still being described even among groups considered well-known. As a result, this inadequate knowledge of the biodiversity has hampered the species’ conservation. Thus, sampling efforts must be urgently optimized to survey important and unique areas and to better allocated the scarce conservation resources, especially in the tropical and developing countries that harbor much of the world biodiversity. We assessed the most relevant regions in terms of environmental dissimilarity for sampling vertebrates (amphibians, birds, and mammals) in the Pernambuco Endemism Center (PEC), located in Atlantic forest and the most threatened region in South America, where only about 1% of remaining forests are protected. We found that 8–41% of the PEC areas showed high sampling relevance for all vertebrate groups, with the non-coastal areas of the PEC presenting the highest sampling relevance in terms of environmental dissimilarity. For all vertebrate groups, the sites with the highest sampling relevance are threatened by fragmentation, and sampling efforts must be allocated to these areas before they are totally converted into human-modified landscapes.

RESUMO: The Pernambuco Center of Endemism (PCE) is the northernmost strip of the Atlantic Forest (AF). Biogeographic affinities among avifaunas in the PCE, the southern-central Atlantic Forest (SCAF), and Amazonia (AM) have not been studied comprehensively, and current patterns of genetic diversity in the PCE remain unclear. The interplay between species’ ecological attributes and historical processes, such as Pleistocene climate fluctuations or the appearance of rivers, may have affected population genetic structures in the PCE. Moreover, the role of past connections between the PCE and AM and the elevational distribution of species in assembling the PCE avifauna remain untested. Here, we investigated the biogeographic history of seven taxa endemic to the PCE within a comparative phylogeographic framework based on a mean of 3,618 independent single nucleotide polymorphisms (SNPs) extracted from flanking regions of ultraconserved elements (UCEs) and one mitochondrial gene. We found that PCE populations were more closely related to SCAF populations than they were to those in AM, regardless of their elevational range, with divergence times placed during the Mid-Pleistocene. These splits were consistent with a pattern of allopatric divergence with gene flow until the upper Pleistocene and no signal of rapid changes in population sizes. Our results support the existence of a Pleistocene refugium driving current genetic diversity in the PCE, thereby rejecting the role of the São Francisco River as a primary barrier for population divergence. Additionally, we found that connections with Amazonia also played a significant role in assembling the PCE avifauna through subsequent migration events.

RESUMO: The conservation of many endangered taxa relies on hybrid identification, and when hybrids become morphologically indistinguishable from the parental species, the use of molecular markers can assign individual admixture levels. Here, we present the puzzling case of the extinct in the wild Alagoas Curassow (Pauxi mitu), whose captive population descends from only three individuals. Hybridization with the Razor-billed Curassow (P. tuberosa) began more than eight generations ago, and admixture uncertainty affects the whole population. We applied an analysis framework that combined morphological diagnostic traits, Bayesian clustering analyses using 14 microsatellite loci, and mtDNA haplotypes to assess the ancestry of all individuals that were alive from 2008 to 2012. Simulated data revealed that our microsatellites could accurately assign an individual a hybrid origin until the second backcross generation, which permitted us to identify a pure group among the older, but still reproductive animals. No wild species has ever survived such a severe bottleneck, followed by hybridization, and studying the recovery capability of the selected pure Alagoas Curassow group might provide valuable insights into biological conservation theory.

RESUMO: Cracids are medium to large frugivorous birds that are endemic to the Neotropics. Because of deforestation and overhunting, many species are threatened. The conservation of several species has relied on captive breeding and reintroduction in the wild, but captive populations may be inbred. Microsatellite tools can permit the construction of genetic pedigrees to reduce inbreeding, but only a few loci are available for this group of birds. Here, we present 10 novel polymorphic microsatellite loci and the cross-amplification of these and of 10 additional loci available in the literature in a panel of 5 cracid species, including 3 species with high conservation concern. We provide the first polymorphic loci for the jacutinga, Aburria jacutinga (N = 8), and red-billed curassow, Crax blumenbachii (N = 9), and additional loci for bare-faced curassow, C. fasciolata (N = 8), Alagoas curassow, Pauxi mitu (N = 5), and razor-billed curassow, P. tuberosa (N = 5). The average number of alleles was 2.9 for A. jacutinga, 2.7 for C. blumenbachii, 3.5 for C. fasciolata, 2.6 for P. mitu, and 5.7 for P. tuberosa. The mean expected heterozygosities were 0.42, 0.40, 0.48, 0.37, and 0.59, respectively. The average probabilities that the set of loci would not exclude a pair of parents of an arbitrary offspring were 2.9% in A. jacutinga, 1% in C. blumenbachii, 0.5% in C. fasciolata, 0.4% in P. mitu, and 0.002% in P. tuberosa suggesting that these loci may be adequate for parentage analysis and to implement ex situ genetic management plans.

RESUMO: The Alagoas Curassow, Pauxi mitu, is extinct in the wild since 2004, and one of the major challenges for its ex situ management is the introgression of alleles from Razor-billed Curassows, P. tuberosa, which occurred in the captive population without pedigree recordings. Here we describe 10 polymorphic microsatellite loci isolated from a P. tuberosa genomic library, nine of which amplified and were polymorphic in both species. Numbers of alleles per locus varied from 2 to 4 in P. mitu, and 2 to 16 in P. tuberosa. These loci will be useful for hybrids identification and for the implementation of an ex situ breeding plan based on the establishment of a pure population of P. mitu.