Publications

Peer Reviewed Papers (* Corresponding Author)

1. Otsuka, N., Yamaguchi, R., Sawa, H., Kadofusa, N., Kato, N., Nomura, Y., Yamaguchi, N.,  Nagano, A.J.,  Sato, A., *Shirakawa, M. and *Ito, T. (2025) Small molecules and heat treatments reverse vernalization via epigenetic modification in Arabidopsis. Communications Biology 8 108 https://doi.org/10.1038/s42003-025-07553-7

2. Nomura, Y., Okada, M., Tameshige, T., Takenaka, S., Shimizu, K.K., Nasuda, S. and *Nagano, A.J. (2025) Subgenome-informed statistical modeling of transcriptomes in 25 common wheat accessions reveals cis- and trans- regulation architectures. Plant and Cell Physiology 66(3) 347–357.  https://doi.org/10.1093/pcp/pcaf011

3. *Nomura, Y., Shimono, Y., Imanishi, J., Nagano, A.J. and Tominaga, T. (2025) Differences in the genetic diversity and genome size between two ecotypes of Imperata cylindrica in Japan. Plant Species Biology 40(2) 175-189. https://doi.org/10.1111/1442-1984.12502 (Open Access) (reject 0回)

4. Kashima, M., Nomura, Y. and *Nagano, A.J. (2024) DeLTa-Seq: High-Throughput Targeted RNA-Seq of Rice Leaves Without RNA Purification.  Rice Methods and Protocols, Part of the book series: Methods in Molecular Biology, pp.113–121. https://link.springer.com/protocol/10.1007/978-1-0716-4204-7_12

5. *Yamauchi,T. , Sumi,K., Morishita,H., and Nomura,Y. (2024) Root anatomical plasticity contributes to the different adaptive responses of two Phragmites species to water-deficit and low-oxygen conditions. Functional Plant Biology 51 FP23231. https://doi.org/10.1071/FP23231

6. *Nomura, Y., Arima, S., Kyogoku, D., Yamauchi, T. and Tominaga, T. (2024) Strong plastic responses in aerenchyma formation in F1 hybrids of Imperata cylindrica under different soil moisture conditions. Plant Biology 26(3) 446-456. https://doi.org/10.1111/plb.13618 (reject 7回、なおPlant Biol.からも査読後にrejectを受けたがappealで回避)

7. Kashima, M., Kamitani, M., Nomura, Y., Mori-Moriyama, N., Betsuyaku, S., Hirata, H. and *Nagano, A.J. (2022) DeLTa-Seq: direct-lysate targeted RNA-Seq from crude tissue lysate. Plant Methods 18, 99 https://plantmethods.biomedcentral.com/articles/10.1186/s13007-022-00930-x

8. Hashida, Y., Tezuka, A., Nomura, Y., Kamitani, M., Kashima, M., Kurita, Y. and *Nagano. A.J. (2022) Fillable and unfillable gaps in plant transcriptome under field and controlled environments. Plant, Cell & Environments 45(8) 2410-2427. https://doi.org/10.1111/pce.14367

9. *Nomura, Y, Shimono, Y., Mizuno, N., Miyoshi, I., Iwakami, S., Sato, K., Tominaga, T. (2022) Drastic shift in flowering phenology of F1 hybrids causing rapid reproductive isolation in Imperata cylindrica in Japan. Journal of Ecology 110(7) 1548-1560. https://doi.org/10.1111/1365-2745.13890 (Open Access) (reject 4回)

10. *Yamaguchi, N., Matsubara, S., Yoshimizu, K., Seki, M., Hamada, K., Kamitani, M., Kurita, Y., Nomura, Y., Nagashima, K., Inagaki, S., Suzuki, T., Gan, E.-S., To, T., Kakutani, T., Nagano, A.J., Satake, A. & *Ito, T. (2021) H3K27me3 demethylases alter HSP22 and HSP17.6C expression in response to recurring heat in Arabidopsis. Nature Communications 12(1) 3480 https://doi.org/10.1038/s41467-021-23766-w (Open Access)

11. *Nomura, Y, Yasuda, K, Nishiwaki, A & Tominaga, T. (2018) Reciprocal transplant experiments testing the performance of common and early flowering types of Imperata cylindrica in Japan. Weed Biology and Management 18(4) 167-175. https://doi.org/10.1111/wbm.12164 (reject 0回)

12. Nomura, Y, Shimono, Y & *Tominaga, T. (2015) Development of chloroplast DNA markers in Japanese Imperata cylindrica. Weed Research, 55(4) 329-333. https://doi.org/10.1111/wre.12149 (reject 1回)

Preprints (* Corresponding Author)

1. Nomura, Y. and *Nagano, A.J. (2025) Year-long transcriptome survey highlights a resource allocation strategy at the late growth stage in a monocarpic plant. bioRxiv https://doi.org/10.1101/2025.10.14.682294

2. Tomita, A.,  Maeda, T., Mori-Moriyama, N., Nomura, Y.,  Kurita, Y., Kashima, M., Betsuyaku, S., and *Nagano, A.J. (2025) Systematic measurements of dose-dependent responses for combinatorial treatments of SA and JA led to the development of transcriptomic biomarkers. bioRxiv https://doi.org/10.1101/2025.05.29.656841

3. Nomura, Y., Okada, M., Tameshige, T., Takenaka, S., Shimizu, K.K., Nasuda, S. and *Nagano, A.J. (2024) Modeling of transcriptomic variation among subgenomes in 25 accessions of common wheat reveals cis- and trans-regulation architectures. bioRxiv https://doi.org/10.1101/2024.10.09.617331→ Plant and Cell Physiologyに掲載 https://doi.org/10.1093/pcp/pcaf011

4. Hashida, Y., Tezuka, A., Nomura, Y., Kamitani, M., Kashima, M., Kurita, Y. & *Nagano. A.J. (2021) Fillable and unfillable gaps in rice transcriptome under field and controlled environments. bioRxiv https://doi.org/10.1101/2021.07.31.454577→ Plant, Cell & Environmentsに掲載https://doi.org/10.1111/pce.14367

5. Kashima, M., Kamitani, M., Nomura, Y., Hirata, H. & *Nagano. A.J. (2020) DeLTa-Seq: direct-lysate targeted RNA-Seq from crude tissue lysate. bioRxiv https://doi.org/10.1101/2020.09.15.299180 → Plant Methodsに掲載https://plantmethods.biomedcentral.com/articles/10.1186/s13007-022-00930-x

6. *Nomura, Y., Shimono, Y., Mizuno, N., Miyoshi, I., Iwakami, S., Sato, K. & Tominaga, T. (2020) Drastic shift in flowering phenology, an instant reproductive isolation mechanism, explains the population structure of Imperata cylindrica in Japan. bioRxiv https://doi.org/10.1101/2020.06.30.179440 → Journal of Ecologyに掲載https://doi.org/10.1111/1365-2745.13890

Others (* Corresponding Author)

1. *野村康之. (2023) チガヤの生態型間F1雑種における劇的な開花期シフト. 植調 57(5) 16-21.

2. *野村康之. (2023) チガヤの生態型間F1雑種の開花期シフトと集団遺伝構造. 雑草研究 68(2) 68-73. 【奨励賞講演の解説記事】

3. *島村聡, 宮下智貴, 江尻真斗, 塩野克宏, 野村康之, 山内卓樹. (2021) 植物組織の空隙率測定方法 ― 4．各測定方法の特徴と選択―. 根の研究 30(4) 124-128.

4. 野村康之, 塩野克宏, 島村聡, *山内卓樹. (2021) 植物組織の空隙率測定方法 ― 3．切片法―. 根の研究 30(3) 76-82.

Books

1.   野村康之. (2025) 第7章 雑種形成がもたらす劇的な開花期シフト. 種生物学会 編. 種分化の生物学－生物多様性を生み出す進化のしくみ. 文一総合出版 pp.167-191.

2.   野村康之. (2025) コラム4 種分化における遺伝子流動の多様な働き. 種生物学会 編. 種分化の生物学－生物多様性を生み出す進化のしくみ. 文一総合出版 pp.193-205.

3. 野村康之. (2023) あなたの知らない食虫植物の世界 驚きの生態から進化の秘密まで，その魅力のすべて. 化学同人