Exercise 4

In your groups fold one or more of the following sequences using the RNAfold and Mfold webservers. How do these predictions compare to your manual efforts?:

>A1

AAAAAAGGCGACAGAGUAAUCUGUCGCCUUUUUUCUUUGCUUGC

>A2

AAGAAAAACGGGUCGCCAGAAGGUGACCCGUUUUUUUUAUUCUUUUA

>A3

AAAAAAGCCCGCACCUGACAGUGCGGGCUUUUUUUUUC

>A4

AAAGCCCGUGAGUAUUCACGGGCUUUUUUAUUAUUUAAU

>B1

UGGGAGGGACGGCCCUCCUAUCCACCAGCAUAUCAGCCGCGGGGACGACCCUG

>B2

GCCCGGGGACGGCCCCGGGCCGUUCGCUUCAACGGGGACGACCCC

>B3

CCUCGGGGACGACCUCGAGGCCUCCUGAUACGCAGGGACGACCCUG

>B4

GAAGCGGGACGACCCGUUUUCCUUCUUUCAUUGCGCGGGGACGACCCUG

>C1

CCAGCCGCUGACGACGGGGCUGGACUUGCUGGGAGCGCCGCCUUUCGGCGCUUCCGUACCCAUGUUGCUUCAAGGAGGAUAUGGCUAUGGCAA

>C2

GCCGAUGCCAAUUGGGUCGGCAUGGUCAGGGAGCGCCACGCUUCUUGGCGCUUCCUCGUAUCUAUGUUGCUCUACGGAGGAUGUAGCUAUGAGAA

>C3

AGAGCCGCCUGUAAGGGGCUCGCAGUCGAGGAGCUCCGUUCUCUUCGGCGCUCCUCAUCGUCCAUGUUGCUCAAGGAGGAUAUGGCUAUGAGAA

>C4

UCGGUCGCCGCAUAAGGGGCCGAUGUGUCAGGGAGCGCCAUGCUUCUUGGCGUUCCCUCGUAUCUAUGUUGCUCCAAGGAGGAUGUAGUUAUGAGAA