>2GOZ
gGAUGUACUACCAGCUGAUGAGUCCCAAAUAGGACGAAACGCCNNNgGCGUcCUGGuAUCCAAuCc query
(((.(...(((((((....).((((......))))...(((((NNN))))).)))))).)...))) FRABASE structure
((((((,,,,,,,<<<<______>>>>,,,<<<<.....>>>>,)))))) CM alignment
UACCAGCUGAUGAGUCCCAAAUAGGACGAAACGCcnnngGCGUCCUGGUA fragment match
>2QUS
gGGAGCCCUGUCACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAGGACAAAACAGGGCUCCCGA
AUU
>3IWN
cACGCACAGGGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACGGCAUUGCACUC
CGCCGUAGGUAGCGGGGUUACCGAUGG
>1SJF
GaUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGU
GAAUGGGACU
>2KFC
gGAGAGGUUCUAGUUAUACCCUCUAUAAAAAACUAAg
>1T28
gGUCAUCGUUGAGAAAACGAAACAGACGGUGGCC