Exercise 5

• Using the Rfam database can you find out which family the below RNA belongs to?
• What is the function of members of this family?
• Are there other web resources that describe this family?
• What other RNA families does Rfam annotate in the E. coli genome?

>query1 bacterial RNA

GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUU

GGCCUCGUAAAAAGCCGCAAAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUU

AAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAG

GUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU

CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACU

AAGCAUGUAGUACCGAGGACGUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCA

CCA