Original papers
67. Junfeng Chen, Kousuke Okimura, Liang Ren, Yusuke Nakane, Tomoya Nakayama, Yang Chen, Kai Fukawa, Soutarou Sugiyama, Takayoshi Natsume, Naoko Suda-Hashimoto, Mayumi Morimoto, Takako Miyabe-Nishiwaki, Takao Oishi, Yuma Katada, Manhui Zhang, Kohei Kobayashi, Shoko Matsumoto, Taiki Yamaguchi, Ying-Jey Guh, Issey Takahashi, Taeko Nishiwaki-Ohkawa, Daiki X Sato, Yoshiharu Murata, Kenta Sumiyama, Atsushi J Nagano, Hiroo Imai, Takashi Yoshimura. "Non-human primate seasonal transcriptome atlas reveals seasonal changes in physiology and diseases" (2025) Nature Communications Apr 28;16(1):3906. doi: 10.1038/s41467-025-57994-1.
66. Eriko Deguchi, Shuhao Lin, Daiki Hirayama, Kimiya Matsuda, Akira Tanave, Kenta Sumiyama, Shinya Tsukiji, Tetsuhisa Otani, Mikio Furuse, Alexander Sorkin, Michiyuki Matsuda, Kenta Terai. "Low-affinity ligands of the epidermal growth factor receptor are long-range signal transmitters in collective cell migration of epithelial cells." (2024) Cell reports Volume 43, Issue 11, 114986 November 26, 2024
65. Yimeng Wang, Siyu Cao, Daisuke Tone, Hiroshi Fujishima, Rikuhiro G. Yamada, Rei-ichiro Ohno, Shoi Shi, Kyoko Matsuzawa, Saori Yada, Mari Kaneko, Hirokazu Sakamoto, Taichi Onishi, Maki Ukai-Tadenuma, Hideki Ukai, Carina Hanashima, Kenzo Hirose, Hiroshi Kiyonari, Kenta Sumiyama, Koji L. Ode and Hiroki R. Ueda. "Postsynaptic competition between calcineurin and PKA regulates mammalian sleep–wake cycles." (2024)Nature 636, pages 412–421. https://doi.org/10.1038/s41586-024-08132-2 Published 06 November 2024
64. Kazuhiro Kon, Koji L. Ode, Tomoyuki Mano, Hiroshi Fujishima, Riina R. Takahashi, Daisuke Tone, Chika Shimizu, Shinnosuke Shiono, Saori Yada, Kyoko Matsuzawa, Shota Y. Yoshida, Junko Yoshida Garçon, Mari Kaneko, Yuta Shinohara, Rikuhiro G. Yamada, Shoi Shi, Kazunari Miyamichi, Kenta Sumiyama, Hiroshi Kiyonari, Etsuo A. Susaki and Hiroki R. Ueda. "Cortical parvalbumin neurons are responsible for homeostatic sleep rebound through CaMKII activation" (2024) Nature Communications volume 15, Article number: 6054 DOI https://doi.org/10.1038/s41467-024-50168-5
63. Shintaro Watanuki, Hiroshi Kobayashi, Yuki Sugiura, Masamichi Yamamoto, Daiki Karigane, Kohei Shiroshita, Yuriko Sorimachi, Takayuki Morikawa, Shinya Fujita, Kotaro Shide, Miho Haraguchi, Shinpei Tamaki, Takumi Mikawa, Hiroshi Kondoh, Hiroyasu Nakano, Kenta Sumiyama, Go Nagamatsu, Nobuhito Goda, Shinichiro Okamoto, Ayako Nakamura-Ishizu, Kazuya Shimoda, Makoto Suematsu, Toshio Suda, Keiyo Takubo. "SDHAF1 confers metabolic resilience to aging hematopoietic stem cells by promoting mitochondrial ATP production" (2024) Cell Stem Cell May 14:S1934-5909(24)00176-0. doi: 10.1016/j.stem.2024.04.023. ONLINE ahead of print.
62. Arthur Millius, Rikuhiro G Yamada, Hiroshi Fujishima, Kazuhiko Maeda, Daron M Standley, Kenta Sumiyama, Dimitri Perrin and Hiroki R Ueda. “Circadian ribosome profiling reveals a role for the Period2 upstream open reading frame in sleep” (2023) Proceedings of the National Academy of Sciences of the United States of America 120 (40) e2214636120 https://doi.org/10.1073/pnas.2214636120
61. Shin Murai, Kanako Takakura, Kenta Sumiyama, Kenta Moriwaki, Kenta Terai, Sachiko Komazawa-Sakon, Takao Seki, Yoshifumi Yamaguchi, Tetuo Mikami, Kimi Araki, Masaki Ohmuraya, Michiyuki Matsuda, Hiroyasu Nakano. “Generation of transgenic mice expressing a FRET biosensor, SMART, that responds to necroptosis” Communications Biology (2022) 5, 1331. accepted. 25th Nov 22, Published 05 December 2022 https://doi.org/10.1038/s42003-022-04300-0
60. Daisuke Tone, Koji L. Ode, Qianhui Zhang, Hiroshi Fujishima, Rikuhiro G. Yamada, Yoshiki Nagashima, Katsuhiko Matsumoto, Zhiqing Wen, Shota Y. Yoshida, Tomoki T. Mitani, Yuki Arisato, Rei-ichiro Ohno, Maki Ukai-Tadenuma, Junko Yoshida Garçon, Mari Kaneko, Shoi Shi, Hideki Ukai, Kazunari Miyamichi, Takashi Okada, Kenta Sumiyama, Hiroshi Kiyonari, Hiroki R. Ueda. "Distinct phosphorylation states of mammalian CaMKIIβ control the induction and maintenance of sleep" PLOS Biology (2022) 20(10) e3001813 https://doi.org/10.1371/journal.pbio.3001813 Oct 4, 2022
59. Hiroshi Ichise, Shoko Tsukamoto, Tsuyoshi Hirashima, Yoshinobu Konishi, Choji Oki, Shinya Tsukiji, Satoshi Iwano, Atsushi Miyawaki, Kenta Sumiyama, Kenta Terai, Michiyuki Matsuda. "Functional visualization of NK Cell-mediated killing of metastatic single tumor cells." eLife (2022) 11:e76269 DOI: 10.7554/eLife.76269 First Published: Feb 3, 2022
58. Jiazhou He, Masamichi Yamamoto, Kenta Sumiyama, Yumi Konagaya, Kenta Terai, Michiyuki Matsuda, Shinya Sato. "Two-photon AMPK and ATP imaging reveals the bias between rods and cones in glycolysis utility" FASEB J. (2021) e21880 DOI: 10.1096/fj.202101121R First Published:27 August 2021
57. Keiji Kawatani, Toshihiko Nambara, Nobutoshi Nawa, Hidetaka Yoshimatsu, Haruna Kusakabe, Katsuya Hirata, Akira Tanave, Kenta Sumiyama, Kimihiko Banno, Hidetoshi Taniguchi, Hitomi Arahori, Keiichi Ozono and Yasuji Kitabatake. "A human isogenic iPSC-derived cell line panel identifies major regulators of aberrant astrocyte proliferation in Down syndrome" Communications Biology (2021) volume 4, Article number: 730 (2021). Published: 14 June 2021 DOI https://doi.org/10.1038/s42003-021-02242-7
56. Ayako Imanishi, Hiroshi Ichise, Chuyun Fan, Yasuaki Nakagawa, Koichiro Kuwahara, Kenta Sumiyama, Michiyuki Matsuda, Kenta Terai. "Visualization of Spatially Controlled Vasospasm by Sympathetic Nerve-Mediated ROCK Activation" The American Journal of Pathology (2021) Published online: October 15, 2020 DOI:https://doi.org/10.1016/j.ajpath.2020.09.012.
55. Tsubasa Itoh, Miki Takeuchi, Marina Sakagami, Kazuhide Asakawa, Kenta Sumiyama, Koichi Kawakami, Takashi Shimizu, Masahiko Hibi. “Gsx2 is required for specification of neurons in the inferior olivary nuclei from Ptf1a-expressing neural progenitors in zebrafish” Development (2020) 147: dev190603 Published 9 October 2020 doi: 10.1242/dev.190603
54. Kenju Kobachi,Sota Kuno,Shinya Sato,Kenta Sumiyama,Michiyuki Matsuda,Kenta Terai. "Biliverdin reductase-A deficiency brighten and sensitize biliverdin-binding chromoproteins" Cell Structure and Function (2020) 45(2): 131-141. Released online on: 2020/06/25 DOI: https://doi.org/10.1247/csf.20010
53. Kenta Sumiyama, Akira Tanave. "The regulatory landscape of the Dlx gene system in branchial arches: shared characteristics among Dlx bigene clusters and evolution." Development, growth & differentiation (2020) 62(5): 355-362. DOI: 10.1111/dgd.12671 REVIEW.
52. Tetsuya Watabe, Kenta Terai, Kenta Sumiyama, Michiyuki Matsuda. "Booster, a Red-Shifted Genetically Encoded Förster Resonance Energy Transfer (FRET) Biosensor Compatible with Cyan Fluorescent Protein/Yellow Fluorescent Protein-Based FRET Biosensors and Blue Light-Responsive Optogenetic Tools" ACS Sensors 2020, 5 (3), 719-730. Publication Date:February 26, 2020 https://doi.org/10.1021/acssensors.9b01941
51. Katsumi Fumoto, Hisako Takigawa-Imamura, Kenta Sumiyama, Shige H. Yoshimura, Natsumi Maehara, Akira Kikuchi. "Mark1 regulates distal airspace expansion through type I pneumocyte flattening in lung development" Journal of Cell Science (2019) 2019: jcs.235556 doi: 10.1242/jcs.235556 Published 12 November 2019
50. Tomoaki Kinjo, Kenta Terai, Shoichiro Horita, Norimichi Nomura, Kenta Sumiyama, Kaori Togashi, So Iwata and Michiyuki Matsuda. "FRET-assisted photoactivation of flavoproteins for in vivo two-photon optogenetics" Nature Methods (2019) volume 16, pages 1029–1036. DOI https://doi.org/10.1038/s41592-019-0541-5
49. Hideki Ukai, Kenta Sumiyama and Hiroki R Ueda. "Next-generation Human Genetics for Organism-level Systems Biology." REVIEW paper. Current Opinion in Biotechnology (2019) 58: 137-145. https://doi.org/10.1016/j.copbio.2019.03.003
48. Yoshiyasu Ono, Yasunori Mori, Yoshihiro Egashira, Kenta Sumiyama and Shigeo Takamori. "Expression of plasma membrane calcium ATPases confers Ca2+/H+ exchange in rodent synaptic vesicles" Scientific Reports (2019) volume 9, Article number: 4289 (2019). https://doi.org/10.1038/s41598-019-40557-y
47. Kenta Sumiyama, Naomi Matsumoto, Junko Garçon-Yoshida, Hideki Ukai, Hiroki R. Ueda, Yo Tanaka. "Easy and efficient production of completely embryonic-stem-cell-derived mice using a micro-aggregation device." PLOS ONE (2018) 13(9): e0203056, September 19, 2018. https://doi.org/10.1371/journal.pone.0203056
46. Yasutaka Niwa, Genki N. Kanda, Rikuhiro G. Yamada, Shoi Shi, Genshiro A. Sunagawa, Maki Ukai-Tadenuma, Hiroshi Fujishima, Naomi Matsumoto, Koh-hei Masumoto, Mamoru Nagano, Takeya Kasukawa, James Galloway, Dimitri Perrin, Yasufumi Shigeyoshi, Hideki Ukai, Hiroshi Kiyonari, Kenta Sumiyama, Hiroki R. Ueda. "Muscarinic Acetylcholine Receptors Chrm1 and Chrm3 Are Essential for REM Sleep" Cell Reports (2018) Volume 24, Issue 9, p2231-2247, AUGUST 28, 2018. DOI:https://doi.org/10.1016/j.celrep.2018.07.082
45. Naoki Komatsu, Kenta Terai, Ayako Imanishi, Yuji Kamioka, Kenta Sumiyama, Takashi Jin, Yasushi Okada, Takeharu Nagai, Michiyuki Matsuda. "A platform of BRET-FRET hybrid biosensors for optogenetics, chemical screening, and in vivo imaging" Scientific Reports (2018) volume 8, Article number: 8984 (2018) Published 12 June 2018 DOI: 10.1038/s41598-018-27174-x
44. Yu Muta, Yoshihisa Fujita, Kenta Sumiyama, Atsuro Sakurai, M Mark Taketo, Tsutomu Chiba, Hiroshi Seno, Kazuhiro Aoki, Michiyuki Matsuda, Masamichi Imajo. "Composite regulation of ERK activity dynamics underlying tumour-specific traits in the intestine" Nature communications (2018) volume 9(1) Article number: 2174 (2018). Published 05 June 2018 DOI: 10.1038/s41467-018-04527-8
43. Yaxiaer Yalikun, Yusufu Aishan, Abulaiti Mosha, Kenta Sumiyama, Yo Tanaka, "Oocyte all-surfaces’ imaging method using micro-scale rotational flow." Micro & Nano Letters (2018), 13 (3):306-311, doi: 10.1049/mnl.2017.0731 Accepted on 10th November 2017
*related—<MHS2017 Best paper awards>
42. Yumi Konagaya, Kenta Terai, Yusuke Hirao, Kanako Takakura, Masamichi Imajo, Yuji Kamioka, Norio Sasaoka, Akira Kakizuka, Kenta Sumiyama, Tomoichiro Asano, Michiyuki Matsuda."A Highly Sensitive FRET Biosensor for AMPK Exhibits Heterogeneous AMPK Responses among Cells and Organs" Cell reports (2017) Volume 21, Issue 9, p2628–2638, 28 November 2017 DOI: 10.1016/j.celrep.2017.10.113
41. Takuya Hiratsuka, Takeshi Sano, Hisashi Kato, Naoki Komatsu, Masamichi Imajo, Yuji Kamioka, Kenta Sumiyama, Fumiaki Banno, Toshiyuki Miyata, Michiyuki Matsuda. "Live imaging of extracellular signal‐regulated kinase and protein kinase A activities during thrombus formation in mice expressing biosensors based on Förster resonance energy transfer." Journal of Thrombosis and Haemostasis (2017) 15: 1487–1499. 2017 Apr 28. doi: 10.1111/jth.13723.
40. Yuji Kamioka, Kanako Takakura, Kenta Sumiyama and Michiyuki Matsuda. "Intravital Förster resonance energy transfer imaging reveals osteopontin‐mediated polymorphonuclear leukocyte activation by tumor cell emboli" Cancer Science (2017) 108: 226-235; Accepted manuscript online: 13 DEC 2016 04:00PM EST | DOI: 10.1111/cas.13132
39. Katsumi Fumoto, Hisako Takigawa-Imamura, Kenta Sumiyama, Tomoyuki Kaneiwa, Akira Kikuch. "Modulation of apical constriction by Wnt signaling is required for lung epithelial shape transition." Development (2017) 144: 151-162; doi: 10.1242/dev.141325
38. Hidenori Nishihara, Naoki Kobayashi, Chiharu Kimura-Yoshida, Kuo Yan, Olga Bormuth, Qiong Ding, Akiko Nakanishi, Takeshi Sasaki, Mika Hirakawa, Kenta Sumiyama, Yasuhide Furuta, Victor Tarabykin, Isao Matsuo, Norihiro Okada. "Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate." PLOS Genetics (2016) 12(10): e1006380. dx.doi.org/10.1371/journal.pgen.1006380
37. Fumiya Tatsuki, Genshiro A. Sunagawa, Shoi Shi, Etsuo A. Susaki, Hiroko Yukinaga, Dimitri Perrin, Kenta Sumiyama, Maki Ukai-Tadenuma, Hiroshi Fujishima, Rei-ichiro Ohno, Daisuke Tone, Koji L. Ode, Katsuhiko Matsumoto, and Hiroki R. Ueda. "Involvement of Ca2+-Dependent Hyperpolarization in Sleep Duration in Mammals" Neuron (2016) 90: 70–85. April 6, 2016 dx.doi.org/10.1016/j.neuron.2016.02.032
36. Genshiro A. Sunagawa†, Kenta Sumiyama†, Maki Ukai-Tadenuma†, Dimitri Perrin†, Hiroshi Fujishima, Hideki Ukai, Osamu Nishimura, Shoi Shi, Rei-ichiro Ohno, Ryohei Narumi, Yoshihiro Shimizu, Daisuke Tone, Koji L. Ode, Shigehiro Kuraku and Hiroki R. Ueda*, †Co-first authors. "Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene" Cell Reports (2016) 14, 1–16, January 26, 2016. dx.doi.org/10.1016/j.celrep.2015.12.052.
35. Masafumi Noguchi, Kenta Sumiyama and Mitsuru Morimoto. "Directed migration of pulmonary neuroendocrine cells toward airway branches organizes the stereotypic location of neuroepithelial bodies" Cell Reports (2015) 13, 1–8, December 29, 2015. dx.doi.org/10.1016/j.celrep.2015.11.058.
34. Akihiro Goto, Ichiro Nakahara, Takashi Yamaguchi, Yuji Kamioka, Kenta Sumiyama, Michiyuki Matsuda, Shigetada Nakanishi, and Kazuo Funabiki. "Circuit-dependent striatal PKA and ERK signaling underlies rapid behavioral shift in mating reaction of male mice" Proceedings of the National Academy of Sciences of the United States of America (2015) 112, 6718-6723. published ahead of print May 11, 2015, doi:10.1073/pnas.1507121112 PNAS May 26, (2015) vol. 112 no. 21 6718-6723.
33. Nilmini Hettiarachchi, Kirill Kryukov, Kenta Sumiyama, and Naruya Saitou. "Lineage specific conserved noncoding sequences of plant genomes: their possible role in nucleosome positioning." Genome Biology and Evolution (2014) 6 (9), 2527-2542. doi: 10.1093/gbe/evu188
32. Rei Mizuno, Yuji Kamioka, Kenji Kabashima, Masamichi Imajo, Kenta Sumiyama, Eiji Nakasho, Takeshi Ito, Yoko Hamazaki, Yoshihisa Okuchi, Yoshiharu Sakai, Etsuko Kiyokawa, and Michiyuki Matsuda. "In vivo imaging reveals PKA regulation of ERK activity during neutrophil recruitment to inflamed intestines" The Journal of Experimental Medicine (2014) vol. 211 no. 6 p1123-1136. doi: 10.1084/jem.20132112
31. Chris T. Amemiya, Jessica Alföldi, Alison P. Lee, Shaohua Fan, Hervé Philippe, Iain MacCallum, Ingo Braasch, Tereza Manousaki, Igor Schneider, Nicolas Rohner, Chris Organ, Domitille Chalopin, Jeramiah J. Smith, Mark Robinson, Rosemary A. Dorrington, Marco Gerdol, Bronwen Aken, Maria Assunta Biscotti, Marco Barucca, Denis Baurain, Aaron M. Berlin, Gregory L. Blatch, Francesco Buonocore, Thorsten Burmester, Michael S. Campbell, Adriana Canapa, John P. Cannon, Alan Christoffels, Gianluca De Moro, Adrienne L. Edkins, Lin Fan, Anna Maria Fausto, Nathalie Feiner, Mariko Forconi, Junaid Gamieldien, Sante Gnerre, Andreas Gnirke, Jared V. Goldstone, Wilfried Haerty, Mark E. Hahn, Uljana Hesse, Steve Hoffmann, Jeremy Johnson, Sibel I. Karchner, Shigehiro Kuraku, Marcia Lara, Joshua Z. Levin, Gary W. Litman, Evan Mauceli, Tsutomu Miyake, M. Gail Mueller, David R. Nelson, Anne Nitsche, Ettore Olmo, Tatsuya Ota, Alberto Pallavicini, Sumir Panji, Barbara Picone, Chris P. Ponting, Sonja J. Prohaska, Dariusz Przybylski, Nil Ratan Saha, Vydianathan Ravi, Filipe J. Ribeiro, Tatjana Sauka-Spengler, Giuseppe Scapigliati, Stephen M. J. Searle, Ted Sharpe, Oleg Simakov, Peter F. Stadler, John J. Stegeman, Kenta Sumiyama, Diana Tabbaa, Hakim Tafer, Jason Turner-Maier, Peter van Heusden, Simon White, Louise Williams, Mark Yandell, Henner Brinkmann, Jean-Nicolas Volff, Clifford J. Tabin, Neil Shubin, Manfred Schartl, David B. Jaffe, John H. Postlethwait, Byrappa Venkatesh, Federica Di Palma, Eric S. Lander, Axel Meyer and Kerstin Lindblad-Toh. "The African coelacanth genome provides insights into tetrapod evolution." Nature 496, 311–316 (2013) doi:10.1038/nature12027
30. Akihiro Goto, Kenta Sumiyama, Yuji Kamioka, Eiji Nakasyo, Keisuke Ito, Mitsuhiro Iwasaki, Hideki Enomoto, and Michiyuki Matsuda. "GDNF and Endothelin 3 Regulate Migration of Enteric Neural Crest-Derived Cells via Protein Kinase A and Rac1." The Journal of Neuroscience (2013) 33(11): 4901-4912; doi: 10.1523/ JNEUROSCI.4828-12.2013
29. Kenta Sumiyama*, Tsutomu Miyake, Jane Grimwood, Andrew Stuart, Mark Dickson, Jeremy Schmutz, Frank H. Ruddle, Richard M. Myers, and Chris T. Amemiya*. “Theria-specific homeodomain and cis-regulatory element evolution of the Dlx3-4 bigene cluster in 12 different mammalian species.” Journal of Experimental Zoology Part B: Molecular and Developmental Evolution (2012) 318 (8), 639-650. Article first published online: 5 SEP 2012 | DOI: 10.1002/jez.b.22469 *Corresponding authors
28. Akiko Nakanishi, Naoki Kobayashi, Asuka Suzuki-Hirano, Hidenori Nishihara, Takeshi Sasaki, Mika Hirakawa, Kenta Sumiyama, Tomomi Shimogori, and Norihiro Okada. "A SINE-Derived Element Constitutes a Unique Modular Enhancer for Mammalian Diencephalic Fgf8." PLOS ONE (2012) 7(8): e43785. doi:10.1371/journal.pone.0043785
27. Kirill Kryukov, Kenta Sumiyama, Kazuho Ikeo, Takashi Gojobori and Naruya Saitou. "A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses." Genome Biology and Evolution (2012) 4(4), 501-512. Accepted 08 Mar 2012, First published online: March 14, 2012. doi: 10.1093/gbe/evs026
26. Yuuta Moriyama, Toru Kawanishi, Ryohei Nakamura, Tatsuya Tsukahara, Kenta Sumiyama, Maximiliano L. Suster, Koichi Kawakami, Atsushi Toyoda, Asao Fujiyama, Yuuri Yasuoka, Yusuke Nagao, Etsuko Sawatari, Atsushi Shimizu, Yuko Wakamatsu, Masahiko Hibi, Masanori Taira, Masataka Okabe, Kiyoshi Naruse, Hisashi Hashimoto, Atsuko Shimada, and Hiroyuki Takeda. "The Medaka zic1/zic4 Mutant Provides Molecular Insights into Teleost Caudal Fin Evolution." Current Biology (2012) 22(7), 601-607. accepted Feb 1, 2012, published online March 01, 2012, doi: 10.1016/j.cub.2012.01.063 .
25. Yuji Kamioka†, Kenta Sumiyama†, Rei Mizuno, Yoshiharu Sakai, Eishu Hirata, Etsuko Kiyokawa, and Michiyuki Matsuda*. †These authors contributed equally to this work "Live Imaging of Protein Kinase Activities in Transgenic Mice Expressing FRET Biosensors." Cell Structure and Function (2012) 37(1), 65-73. PDF advanced online publication 2012 Jan 24.
24. Jeramiah J. Smith, Kenta Sumiyama and Chris T. Amemiya. "A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome" Molecular Biology and Evolution (2012) 29(3), 985-993. epub October 31, 2011. doi: 10.1093/molbev/msr267.
23. Kensuke Tashiro, Anne Teissier, Naoki Kobayashi, Akiko Nakanishi, Takeshi Sasaki, Kuo Yan, Victor Tarabykin, Lisa Vigier, Kenta Sumiyama, Mika Hirakawa, Hidenori Nishihara, Alessandra Pierani, and Norihiro Okada. "A Mammalian Conserved Element Derived from SINE Displays Enhancer Properties Recapitulating Satb2 Expression in Early-Born Callosal Projection Neurons" PLOS ONE (2011) 6(12) e28497.
22. Kenta Sumiyama* and Naruya Saitou. "Loss-of-function mutation in a repressor module of human-specifically activated enhancer HACNS1." Molecular Biology and Evolution (2011) 28(11), 3005-3007. doi: 10.1093/molbev/msr231. *Corresponding author
21. Masatoshi Matsunami, Kenta Sumiyama, and Naruya Saitou. "Evolution of conserved non-coding sequences within the vertebrate hox clusters through the two-round whole genome duplications revealed by phylogenetic footprinting analysis" Journal of Molecular Evolution (2010) 71, 427-436.
20. Kenta Sumiyama*, Koichi Kawakami, and Kazuhiro Yagita. "A simple and highly efficient transgenesis method in mice with the Tol2 transposon system and cytoplasmic microinjection." Genomics (2010) 95, 306-311. *Corresponding author
19. Maximiliano L Suster, Kenta Sumiyama and Koichi Kawakami. "Transposon-mediated BAC transgenesis in zebrafish and mice." BMC Genomics (2009) 10:477.
18. Tomoko Sagai, Takanori Amano, Masaru Tamura, Yoichi Mizushina, Kenta Sumiyama and Toshihiko Shiroishi. "A cluster of three long-range enhancers directs regional Shh expression in the epithelial linings." Development (2009)136: 1665-1674.
17. Takeshi Sasaki, Hidenori Nishihara, Mika Hirakawa, Koji Fujimura, Mikiko Tanaka, Nobuhiro Kokubo, Chiharu Kimura-Yoshida, Isao Matsuo, Kenta Sumiyama, Naruya Saitou, Tomomi Shimogori and Norihiro Okada. "Possible involvement of SINEs in mammalian-specific brain formation." Proceedings of the National Academy of Sciences of the United States of America (2008) 105, 4220-4225.
16. Masaru Tamura, Shigekazu Tanaka, Tomoaki Fujii, Aya Aoki, Hiromitu Komiyama, Kiyoshi Ezawa, Kenta Sumiyama, Tomoko Sagai, Toshihiko Shiroishi. "Members of a novel gene family, Gsdm, are expressed exclusively in the epithelium of the skin and gastrointestinal tract in a highly tissue-specific manner." Genomics (2007) 89(5):618-629. Epub 2007 Mar 12.
15. Hiroshi Masuya, Hideki Sezutsu, Yoshiyuki Sakuraba, Tomoko Sagai, Masaki Hosoya, Hideki Kaneda, Ikuo Miura, Kimio Kobayashi, Kenta Sumiyama, Aya Shimizu, Junko Nagano, Haruka Yokoyama, Satoko Kaneko, Noriko Sakurai, Yuka Okagaki, Tetsuo Noda, Shigeharu Wakana, Yoichi Gondo, Toshihiko Shiroishi. "A series of ENU-induced singlebase substitutions in a long-range cis-element altering Sonic hedgehog expression in the developing mouse limb bud." Genomics (2007) 89(2): 207-14. Epub 2006 Oct 13.
14. Kenta Sumiyama and Frank H. Ruddle. "Regulation of Dlx3 gene expression in visceral arches by evolutionarily conserved enhancer elements." Proceedings of the National Academy of Sciences of the United States of America (2003) 100: 4030-4034.
13. Chang-Bae Kim, Cooduvalli S. Shashikant, Kenta Sumiyama, Chris T. Amemiya, Wayne C. H. Wang and Frank H. Ruddle. "Phylogenetic Analysis of the Mammalian Hoxc8 Non-coding Region." Journal of Structural and Functional Genomics (2003) 3: 195-199.
12. Kenta Sumiyama, Steven Q. Irvine and Frank H. Ruddle. "The role of gene duplication in the evolution and function of the vertebrate distal-less/Dlx bigene cluster." Journal of Structural and Functional Genomics (2003) 3: 151-159.
11. Kenta Sumiyama*, Naruya Saitou and Shintaroh Ueda. "Adaptive evolution of the IgA hinge region in primates." Molecular Biology and Evolution (2002) 19:1093-1099. *Corresponding author
10. Dashzeveg Bayarsaihan, Judit Dunai, John M. Greally, Kazuhiko Kawasaki, Kenta Sumiyama, Badam Enkhmandakh, Nobuyoshi Shimizu, and Frank H. Ruddle. "Genomic organization of the genes gtf2ird1, gtf2i, and ncf1 at the mouse chromosome 5 region syntenic to the human chromosome 7q11.23 Williams syndrome critical region." Genomics (2002) 79: 137-43.
9. Kenta Sumiyama, Steven Q. Irvine, David W. Stock, Kenneth M. Weiss, Kazuhiko Kawasaki, Nobuyoshi Shimizu, Cooduvalli S. Shashikant, Webb Miller, and Frank H. Ruddle. "Genomic Structure and Functional Control of the Dlx3-7 Bigene Cluster." Proceedings of the National Academy of Sciences of the United States of America (2002) 99: 780-785.
8. Kenta Sumiyama, Chang-Bae Kim, and Frank H.Ruddle. "An efficient cis-element discovery method using multiple sequence comparisons based on evolutionary relationships." Genomics (2001) 71: 260-262.
7. Kenta Sumiyama, Takashi Kitano, Reiko Noda, Robert E. Ferrell and Naruya Saitou. "Gene diversity of chimpanzee ABO blood group genes elucidated from exon 7 sequences." Gene (2000) 259:75-79.
6. Takashi Kitano, Reiko Noda, Kenta Sumiyama, Robert E. Ferrell, and Naruya Saitou. "Gene diversity of chimpanzee ABO blood group genes elucidated from intron 6 sequences." Journal of Heredity (2000) 91(3): 211-214.
5. Takashi Kitano, Kenta Sumiyama, Toshihiko Shiroishi, and Naruya Saitou. "Conserved evolution of the Rh50 gene compared to its homologous Rh blood group gene." Biochemical and Biophysical Research Communications (1998) 249(1): 78-85.
4. Kenta Sumiyama*, Shohji Kawamura, Osamu Takenaka and Shintaroh Ueda. "A High Sequence Variety in the Immunoglobulin C alpha Hinge Region among Old World Monkeys." Anthropological Science (1998) 106: 31-39. *Corresponding author
3. Kenta Sumiyama, Keiko Washio-Watanabe, Takao Ono, Michihiro C.Yoshida, Toshiyuki Hayakawa, and Shintaroh Ueda. "Human class III POU genes, POU3F1 and POU3F3, map to chromosomes 1p34.1 and 3p14.2." Mammalian Genome (1997) 9: 180-181.
2. Yutaka Nakachi, Toshiyuki Hayakawa, Hiroki Oota, Kenta Sumiyama, Li Wang, and Shintaroh Ueda. "Nucleotide Compositional Constraints on Genomes Generate Alanine-, Glycine-, and Proline-rich Structures in Transcription Factors." Molecular Biology and Evolution (1997) 14(10): 1042-1049.
1. Kenta Sumiyama, Keiko Washio-Watanabe, Naruya Saitou, Toshiyuki Hayakawa, Shintaroh Ueda. "Class III POU Genes: Generation of Homopolymeric Amino Acid Repeats Under GC Pressure in Mammals." Journal of Molecular Evolution (1996) 43:170-178.