Publications
研究業績
75. Mako Takada, Chunqi Jiang, Youta Sugai, Masumi Hasegawa-Takano, Takayoshi Fujiwara, Yuya Tsukamoto, Yu Nakajima, Yosuke Nishimura, Susumu Yoshizawa. Draft genome sequences of three rhodopsin possessing Croceitalea sp. strains, isolated from the sea surface microlayer in Japan. Microbiology Resource Announcements. (2024) https://doi.org/10.1128/mra.00038-24
74. Sarah M. Andrew, Carly M. Moreno, Kaylie Plumb, Babak Hassanzadeh, Laura Gomez-Consarnau, Stephanie N. Smith, Oscar Schofield, Susumu Yoshizawa, Takayoshi Fujiwara, William G. Sunda, Brian M. Hopkinson, Alecia N. Septer, and Adrian Marchetti. Widespread use of proton-pumping rhodopsin in Antarctic phytoplankton. Proceedings of the National Academy of Sciences of the United States of America, 120(39), e2307638120 (2023) https://doi.org/10.1073/pnas.2307638120
研究トピック（AORI）: 南極海に広く分布する珪藻の新たな光利用戦略
73. Md Mehedi Iqbal, Masahiko Nishimura, Masayoshi Sano, Susumu Yoshizawa. Particle-attached Microbes in Eelgrass Vegetation Areas Differ in Community Structure Depending on the Distance from the Eelgrass Bed. Microbes and Environments, 38(3), ME23013. (2023) https://doi.org/10.1264/jsme2.ME23013
72. Marie Kurihara, Vera Thiel, Hirona Takahashi, Keiichi Kojima, David M. Ward, Donald A. Bryant, Makoto Sakai, Susumu Yoshizawa and Yuki Sudo. Identification of a Functionally Efficient and Thermally Stable Outward Sodium-Pumping Rhodopsin (BeNaR) from a Thermophilic Bacterium. Chemical and Pharmaceutical Bulletin, 71(2), 154-164. (2023) https://doi.org/10.1248/cpb.c22-00774
71. Susumu Yoshizawa, Tomonori Azuma, Keiichi Kojima, Keisuke Inomura, Masumi Hasegawa, Yosuke Nishimura, Masuzu Kikuchi, Gabrielle Armin, Yuya Tsukamoto, Hideaki Miyashita, Kentaro Ifuku, Takashi Yamano, Adrian Marchetti, Hideya Fukuzawa, Yuki Sudo, Ryoma Kamikawa. Light-driven Proton Pumps as a Potential Regulator for Carbon Fixation in Marine Diatoms. Microbes and Environments, 38(2), ME23015. (2023) https://doi.org/10.1264/jsme2.ME23015
70. Takuhei Shiozaki, Yosuke Nishimura, Susumu Yoshizawa, Hideto Takami, Koji Hamasaki, Amane Fujiwara, Shigeto Nishino & Naomi Harada. Distribution and survival strategies of endemic and cosmopolitan diazotrophs in the Arctic Ocean. The ISME journal. 17, 1340-1350. (2023) https://doi.org/10.1038/s41396-023-01424-x
プレスリリース（AORI）: 北極海に生息する窒素固定生物のゲノム解読に成功 ―北極固有種の存在とその特徴が明らかに―
69. Keiichi Kojima, Shiho Kawanishi, Yosuke Nishimura, Masumi Hasegawa, Shin Nakao, Yuya Nagata, Susumu Yoshizawa and Yuki Sudo. A blue-shifted anion channelrhodopsin from the Colpodellida alga Vitrella brassicaformis. Scientific Reports. 13, Article number: 6974 (2023) https://doi.org/10.1038/s41598-023-34125-8
68. Ariel Chazan†, Ishita Das†, Takayoshi Fujiwara†, Shunya Murakoshi†, Andrey Rozenberg†, Ana Molina-Márquez, Fumiya K. Sano, Tatsuki Tanaka, Patricia Gómez-Villegas, Shirley Larom, Alina Pushkarev, Partha Malakar, Masumi Hasegawa, Yuya Tsukamoto, Tomohiro Ishizuka, Masae Konno, Takashi Nagata, Yosuke Mizuno, Kota Katayama, Rei Abe-Yoshizumi, Sanford Ruhman, Keiichi Inoue, Hideki Kandori, Rosa M. León, Wataru Shihoya*, Susumu Yoshizawa*, Mordechai Sheves*, Osamu Nureki*, and Oded Béjà*. Phototrophy by antenna-containing rhodopsin pumps in aquatic environments. Nature. 615, pages535–540 (2023) https://doi.org/10.1038/s41586-023-05774-6
プレスリリース（AORI）: 地球全体に分布するロドプシン保有細菌の新たな光エネルギー獲得戦略
プレスリリース（新領域）: 地球全体に分布するロドプシン保有細菌の新たな光エネルギー獲得戦略
67. Md Mehedi Iqbal*, Masahiko Nishimura, Md. Nurul Haider, and Susumu Yoshizawa*. Microbial communities on eelgrass (Zostera marina) thriving in Tokyo Bay and the possible source of leaf-attached microbes. Frontiers in Microbiology, 13. (2023) https://doi.org/10.3389/fmicb.2022.1102013
66. Zeshu Yu, Shin-ichi Ito, Marty Kwok-Shing Wong, Susumu Yoshizawa, Jun Inoue, Sachihiko Itoh, Ryuji Yukami, Kazuo Ishikawa, Chenying Guo, Minoru Ijichi, Susumu Hyodo. Comparison of species-specific qPCR and metabarcoding methods to detect small pelagic fish distribution from open ocean environmental DNA. PLOS ONE, (2022) DOI: 10.1371/journal.pone.0273670
プレスリリース(AORI)：海水に含まれるDNAから外洋の小型浮魚類の分布を探る
65. Yosuke Nishimura and Susumu Yoshizawa. The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments. Scientific Data, 9, Article number:305. (2022) DOI: 10.1038/s41597-022-01392-5
プレスリリース(AORI)：「微生物ダークマター」を解き明かす ー世界最大の海洋微生物ゲノムカタログー
プレスリリース(JST)：「微生物ダークマター」を解き明かす ー世界最大の海洋微生物ゲノムカタログー
64. Toshiaki Hosaka, Takashi Nomura, Minoru Kubo, Takanori Nakane, Luo Fangjia, Shun-ichi Sekine, Takuhiro Ito, Kazutaka Murayama, Kentaro Ihara, Haruhiko Ehara, Kazuhiro Kashiwagi, Kazushige Katsura, Ryogo Akasaka, Tamao Hisano, Tomoyuki Tanaka, Rie Tanaka, Toshi Arima, Ayumi Yamashita, Michihiro Sugahara, Hisashi Naitow, Yoshinori Matsuura, Susumu Yoshizawa, Kensuke Tono, Shigeki Owada, Osamu Nureki, Tomomi Kimura-Someya, So Iwata, Eriko Nango, Mikako Shirouzu. Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers. Proceedings of the National Academy of Sciences of the United States of America, 119(9), 2117433119. (2022) DOI: 10.1073/pnas.2117433119
プレスリリース : 光でイオンを輸送する膜タンパク質の巧妙な仕組み －XFELが捉えた光駆動型イオンポンプロドプシンの構造変化－
63. Md Mehedi Iqbal, Masahiko Nishimura, Md Nurul Haider, Masayoshi Sano, Minoru Ijichi, Kazuhiro Kogure, Susumu Yoshizawa. Diversity and Composition of Microbial Communities in an Eelgrass (Zostera marina) Bed in Tokyo Bay, Japan. Microbes and Environments, 36(4), ME21037. (2021) DOI: 10.1264/jsme2.ME21037
62. Masuzu Kikuchi, Keiichi Kojima, Shin Nakao, Susumu Yoshizawa, Shiho Kawanishi, Atsushi Shibukawa, Takashi Kikukawa and Yuki Sudo. Functional expression of the eukaryotic proton pump rhodopsin OmR2 in Escherichia coli and its photochemical characterization. Scientific Reports, 11:14765. (2021) DOI: 10.1038/s41598-021-94181-w
61. Susumu Yoshizawa, Eiko Ikemoto, Kazuhiro Kogure. Visualization of Bacteria (Vibrio alginolyticus) as They Really Are by Atomic Force Microscopy. Cytologia, 85(4), 261-262. (2020) DOI: 10.1508/cytologia.85.261
60. Keiichi Kojima*, Susumu Yoshizawa*, Masumi Hasegawa, Masaki Nakama, Marie Kurihara, Takashi Kikukawa, Yuki Sudo*. Lokiarchaeota archaeon schizorhodopsin-2 (LaSzR2) is an inward proton pump displaying a characteristic feature of acid-induced spectral blue-shift. Scientific Reports, 10:20857. (2020) (These authors* contributed equally: Keiichi Kojima and Susumu Yoshizawa) DOI: 10.1038/s41598-020-77936-9
59. Yu Nakajima*, Keiichi Kojima, Yuichiro Kashiyama, Satoko Doi, Ryosuke Nakai, Yuki Sudo, Kazuhiro Kogure and Susumu Yoshizawa*. Bacterium Lacking a Known Gene for Retinal Biosynthesis Constructs Functional Rhodopsins. Microbes and Environments, 35(4). (2020) DOI: 10.1264/jsme2.ME20085
中島さんによる解説記事はこちら
58. Hui Jia, Yibang Wang, Susumu Yoshizawa, Wataru Iwasaki, Yuquan Li, Weiwei Xian, and Hui Zhang. Seasonal variation and assessment of fish resources in the Yangtze Estuary based on environmental DNA. Water, 12, 2874. (2020)
57. Masumi Hasegawa, Toshiaki Hosaka, Keiichi Kojima, Yosuke Nishimura, Yu Nakajima, Tomomi Kimura-Someya, Mikako Shirouzu, Yuki Sudo and Susumu Yoshizawa. A unique clade of light-driven proton-pumping rhodopsins evolved in the cyanobacterial lineage. Scientific Reports, 10:16752. (2020) DOI: 10.1038/s41598-020-73606-y
研究トピック: 光合成微生物“シアノバクテリア”の新たな光エネルギー利用機構 ーシアノロドプシンの発見ー
56. Keiichi Kojima, Tetsuya Ueta, Tomoyasu Noji, Keisuke Saito, Kanae Kanehara, Susumu Yoshizawa, Hiroshi Ishikita and Yuki Sudo. Vectorial Proton Transport Mechanism of RxR, a Phylogenetically Distinct and Thermally Stable Microbial Rhodopsin. Scientific Reports, 10:282. (2020) DOI: 10.1038/s41598-019-57122-2
55. David M. Needham*, Susumu Yoshizawa*, Toshiaki Hosaka*, Camille Poirier, Chang Jae Choi, Elisabeth Hehenberger, Nicholas A. T. Irwin, Susanne Wilken, Cheuk-Man Yung, Charles Bachy, Rika Kurihara, Yu Nakajima, Keiichi Kojima, Tomomi Kimura-Someya, Guy Leonard, Rex R. Malmstrom, Daniel R. Mende, Daniel K. Olson, Yuki Sudo, Sebastian Sudek, Thomas A. Richards, Edward F. DeLong, Patrick J. Keeling, Alyson E. Santoro, Mikako Shirouzu, Wataru Iwasaki and Alexandra Z. Worden. A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. Proceedings of the National Academy of Sciences of the United States of America, 116, 20574-20583. (2019) (D.M.N., S.Y., and T.H. contributed equally to this work.) DOI: 10.1073/pnas.1907517116
54. Hui Zhang, Susumu Yoshizawa, Wataru Iwasaki, and Weiwei Xian. Seasonal fish assemblage structure using environmental DNA in the Yangtze Estuary and its adjacent waters. Frontiers in Marine Science, 6, 515. (2019) DOI: 10.3389/fmars.2019.00515
53. James H. Marshel, Yoon Seok Kim, Timothy A. Machado, Sean Quirin, Brandon Benson, Jonathan Kadmon, Cephra Raja, Adelaida Chibukhchyan, Charu Ramakrishnan, Masatoshi Inoue, Janelle C. Shane, Douglas J. McKnight, Susumu Yoshizawa, Hideaki E. Kato, Surya Ganguli, Karl Deisseroth. Cortical layer–specific critical dynamics triggering perception. Science. eaaw5202 (2019) DOI: 10.1126/science.aaw5202
52. Atsushi Shibukawa, Keiichi Kojima, Yu Nakajima, Yosuke Nishimura, Susumu Yoshizawa and Yuki Sudo. Photochemical Characterization of a New Heliorhodopsin from the Gram-Negative Eubacterium Bellilinea caldifistulae (BcHeR) and Comparison with Heliorhodopsin-48C12. Biochemistry, 58(26), 2934-2943. (2019) DOI:10.1021/acs.biochem.9b00257
51. Jaeho Song, Ilnam Kang, Yochan Joung, Susumu Yoshizawa, Ryo Kaneko, Kenshiro Oshima, Masahira Hattori, Koji Hamasaki, Kazuhiro Kogure, Soochan Kim, Kangseok Lee and Jang-Cheon Cho. Genome analysis of Rubritalea profundi SAORIC-165T, the first deep-sea verrucomicrobial isolate, from the northwestern Pacific Ocean. Journal of Microbiology, 57. (2019) DOI:10.1007/s12275-019-8712-8
50. Hao Zhang, Susumu Yoshizawa, Ying Sun, Yongjie Huang, Xiao Chu, José M. González, Jarone Pinhassi, Haiwei Luo. Repeated Evolutionary Transitions of Flavobacteria from Marine to Non‐Marine Habitats. Environmental Microbiology, 21(2), 648-666. (2019). DOI:10.1111/1462-2920.14509
49. Tsuyoshi Takano, Minoru Ijichi, Hajime Itoh, Hideki Fukuda and Susumu Yoshizawa. Complete mitochondrial genome sequences of a deep-sea holothurian species of the genus Scotoplanes (Elasipodida: Elpidiidae). Mitochondrial DNA Part B, 4, 112-113. (2019)
48. Shu-Kuan Wong, Susumu Yoshizawa, Yu Nakajima, Marie Johanna Cuadra, Yuichi Nogi, Keiji Nakamura, Hideto Takami, Yoshitoshi Ogura, Tetsuya Hayashi, Hiroshi Xavier Chiura, Koji Hamasaki. Amylibacter kogurei sp. nov., a novel marine alphaproteobacterium isolated from the coastal sea surface microlayer of a marine inlet. International Journal of Systematic and Evolutionary Microbiology, 68: 2872-2877. (2018) DOI: 10.1099/ijsem.0.002911
47. Masumi Hasegawa, Yu Nakajima, Shu-Kuan Wong, Keiji Nakamura, Yoshitoshi Ogura, Tetsuya Hayashi, Kazuhiro Kogure, Susumu Yoshizawa. Draft Genome Sequence of Saccharospirillum sp. Strain MSK14-1, Isolated from Surface Seawater Collected at Aburatsubo Inlet in Japan. Genome announcements, 6: e01255-17. (2018) DOI: 10.1128/genomeA.00469-18.
46. Minoru Ijichi, Tsuyoshi Takano, Masumi Hasegawa, Haruka Yashiki, Kazuhiro Kogure, Shigeaki Kojima, and Susumu Yoshizawa. The complete mitochondrial genome of the longfin dragonfish Tactostoma macropus (Stomiiformes: Stomiidae). Mitochondrial DNA Part B, 3, 486-487. (2018) DOI: 10.1080/23802359.2018.1464411
45. Yu Nakajima, Takashi Tsukamoto, Yohei Kumagai, Yoshitoshi Ogura, Tetsuya Hayashi, Jaeho Song, Takashi Kikukawa, Makoto Demura, Kazuhiro Kogure, Yuki Sudo and Susumu Yoshizawa. Presence of a haloarchaeal halorhodopsin-like Cl– pump in marine bacteria. Microbes and Environments, 33, 89-97. (2018) DOI: 10.1264/jsme2.ME17197
44. Yohei Kumagai, Susumu Yoshizawa, Yu Nakajima, Mai Watanabe, Tsukasa Fukunaga, Yoshitoshi Ogura, Tetsuya Hayashi, Kenshiro Oshima, Masahira Hattori, Masahiko Ikeuchi, Kazuhiro Kogure, Edward F. DeLong and Wataru Iwasaki. Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia. The ISME journal, 12, 1329-1343 . (2018) DOI: 10.1038/s41396-018-0058-4
プレスリリース: 光を利用するか、それとも避けるか？ ～海洋細菌の二種類の光適応戦略の解明～
43. Daniel K. Olson, Susumu Yoshizawa, Dominique Boeuf, Wataru Iwasaki, Edward F. DeLong. Proteorhodopsin Variability and Distribution in the North Pacific Subtropical Gyre. The ISME journal, 12, 1047-1060. (2018) DOI: 10.1038/s41396-018-0074-4
42. Saki Inoue, Susumu Yoshizawa, Yu Nakajima, Keiichi Kojima, Takashi Tsukamoto, Takashi Kikukawa and Yuki Sudo. Spectroscopic characteristics of Rubricoccus marinus xenorhodopsin (Rm XeR) and a putative model for its inward H+ transport mechanism. Physical Chemistry Chemical Physics, 20, 3172-3183. (2018) DOI: 10.1039/c7cp05033j.
41. Yohei Kumagai, Susumu Yoshizawa, Keiji Nakamura, Yoshitoshi Ogura, Tetsuya Hayashi, Kazuhiro Kogure. Complete and Draft Genome Sequences of Eight Oceanic Pseudomonas aeruginosa Strains. Genome announcements, 5: e01255-17. (2017) DOI: 10.1128/genomeA. 01255-17.
40. Yu Nakajima, Susumu Yoshizawa, Sanghwa Park, Yohei Kumagai, Shu-Kuan Wong, Yoshitoshi Ogura, Tetsuya Hayashi and Kazuhiro Kogure. Draft Genome Sequence of Rubricoccus marinus SG-29T, a Marine Bacterium within the Family Rhodothermaceae, Which Contains Two Different Rhodopsin Genes. Genome announcements, 5: e00990-17. (2017) DOI: 10.1128/genomeA.00990-17.
39. Shu-Kuan Wong, Sanghwa Park, Jung-Sook Lee, Keun Chul Lee, Yoshitoshi Ogura, Tetsuya Hayashi, Hiroshi Xavier Chiura, Susumu Yoshizawa and Koji Hamasaki. Algibacter aquaticus sp. nov., a slightly alkaliphilic marine Flavobacterium isolated from coastal surface water. International Journal of Systematic and Evolutionary Microbiology, 67, 2199-2204. (2017) DOI: 10.1099/ijsem.0.001924
38. Akiko Niho∇, Susumu Yoshizawa∇, Takashi Tsukamoto∇, Marie Kurihara, Shinya Tahara, Yu Nakajima, Misao Mizuno, Hikaru Kuramochi, Tahei Tahara, Yasuhisa Mizutani, and Yuki Sudo. Demonstration of a Light-Driven SO42– Transporter and Its Spectroscopic Characteristics. Journal of the American Chemical Society, 139: 4376–4389. (2017) DOI: 10.1021/jacs.6b12139 (∇A.N., S.Y., and T.Ts. contributed equally to this work.)
プレスリリース: 光ではたらく硫酸イオン輸送体「SyHR」を発見 これまでに例のない機能を持つことが判明
37. Takashi Tsukamoto, Susumu Yoshizawa, Takashi Kikukawa, Makoto Demura, and Yuki Sudo. Implications for the Light-Driven Chloride Ion Transport Mechanism of Nonlabens marinus Rhodopsin 3 by Its Photochemical Characteristics. The Journal of Physical Chemistry B, 121: 2027-2038. (2017) DOI: 10.1021/acs.jpcb.6b11101
36. Satoko Doi, Takashi Tsukamoto, Susumu Yoshizawa and Yuki Sudo. An inhibitory role of Arg-84 in anion channelrhodopsin-2 expressed in Escherichia coli. Scientific Reports, 7:41879. (2017) DOI: 10.1038/srep41879.
35. Kanae Kanehara, Susumu Yoshizawa, Takashi Tsukamoto and Yuki Sudo. A phylogenetically distinctive and extremely heat stable light-driven proton pump from the eubacterium Rubrobacter xylanophilus DSM 9941T. Scientific Reports, 7:44427. (2017) DOI: 10.1038/srep44427.
プレスリリース: 光で働く新イオンポンプを発見 安定性世界新記録！
34. Yu Nakajima, Susumu Yoshizawa, Keiji Nakamura, Yoshitoshi Ogura, Tetsuya Hayashi and Kazuhiro Kogure. Draft Genome Sequences of Tersicoccus phoenicis DSM 30849T, Isolated from a Cleanroom for Spacecraft Assembly, and Tersicoccussp. Strain Bi-70, Isolated from a Freshwater Lake. Genome announcements, 5: e00079-17. (2017) DOI:10.1128/genomeA.00079-17.
33. Ryo Kaneko, Shu-Kuan Wong, Yoshitoshi Ogura, Tetsuya Hayashi, Susumu Yoshizawa and Koji Hamasaki. Draft Genome Sequences of Two Fabibacter sp. Strains Isolated from Coastal Surface Water of Aburatsubo Inlet, Japan. Genome announcements, 4: e01360-16. (2016) DOI:10.1128/genomeA.01360-16.
32. Shu-Kuan Wong, Susumu Yoshizawa, Yu Nakajima, Yoshitoshi Ogura, Tetsuya Hayashi and Koji Hamasaki. Draft Genome Sequence of Lewinella sp. Strain 4G2 Isolated from the Coastal Sea Surface Microlayer. Genome announcements, 4:e00754-16. (2016) DOI: 10.1128/genomeA.00754-16
31. Toshiaki Hosaka, Susumu Yoshizawa, Yu Nakajima, Noboru Ohsawa, Masakatsu Hato, Edward F. DeLong, Kazuhiro Kogure, Shigeyuki Yokoyama, Tomomi Kimura-Someya, Wataru Iwasaki and Mikako Shirouzu. Structural mechanism for light-driven transport by a new type of chloride ion pump, Nonlabens marinus rhodopsin-3. Journal of Biological Chemistry, 291, 17488-17495. (2016) DOI: 10.1074/jbc.M116.728220
30. Yuki Sudo and Susumu Yoshizawa. Functional and Photochemical Characterization of a Light- Driven Proton Pump from the Gammaproteobacterium Pantoea vagans. Photochemistry and Photobiology, 92, 420-427. (2016) DOI: 10.1111/php.12585
29. Satoshi Hiraoka, Asako Machiyama, Minoru Ijichi, Kentaro Inoue,Kenshiro Oshima, Masahira Hattori, Susumu Yoshizawa, Kazuhiro Kogure,and Wataru Iwasaki. Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake Tsunami. BMC Genomics, 17, 53. (2016) DOI: 10.1186/s12864-016-2380-4
28. Hideaki E. Kato, Keiichi Inoue, Rei Abe-Yoshizumi, Yoshitaka Kato, Hikaru Ono, Masae Konno, Shoko Hososhima, Toru Ishizuka, Mohammad Razuanul Hoque, Hirofumi Kunitomo, Jumpei Ito, Susumu Yoshizawa, Keitaro Yamashita, Mizuki Takemoto, Tomohiro Nishizawa, Reiya Taniguchi, Kazuhiro Kogure, Andrés D. Maturana, Yuichi Iino, Hiromu Yawo, Ryuichiro Ishitani, Hideki Kandori and Osamu Nureki. Structural basis for Na+ transport mechanism by a light-driven Na+ pump. Nature, 521, 48-53. (2015) DOI: 10.1038/nature14322
プレスリリース: 光によってナトリウムイオンを細胞外へと運び出す仕組の解明
27. Hyunsang Lee, Susumu Yoshizawa, Kazuhiro Kogure, Hyun Soo Kim and Jaewoo Yoon. Pelagitalea pacifica gen. nov., sp. nov., a New Marine Bacterium Isolated from Seawater. Current Microbiology, 70: 514-519. (2015) DOI: 10.1007/s00284-014-0750-1
26. Jaeho Song, Ayoung Choi, Mihye Im, Yochan Joung, Susumu Yoshizawa, Jang-Cheon Cho and Kazuhiro Kogure. Aurantivirga profunda gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from deep seawater. International Journal of Systematic and Evolutionary Microbiology, 65, 4850-4856. (2015) DOI: 10.1099/ijsem.0.000662
25. Yohei Kumagai, Susumu Yoshizawa, Kenshiro Oshima, Masahira Hattori, Wataru Iwasaki, and Kazuhiro Kogure. Complete Genome Sequence of Winogradskyella sp. PG-2, a Proteorhodopsin-Containing Marine Flavobacterium. Genome announcements, 2:e00490-14. (2014) DOI:10.1128/genomeA.00490-1
24. Susumu Yoshizawa, Yohei Kumagai, Hana Kim, Yoshitoshi Ogura, Tetsuya Hayashi, Wataru Iwasaki, Edward F. DeLong and Kazuhiro Kogure. Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria. Proceedings of the National Academy of Sciences of the United States of America, 111, 6732-6737. (2014) DOI:10.1073/pnas.1403051111
プレスリリース: 海洋細菌で見つけた新しい光エネルギー利用機構 －塩化物イオンを輸送するポンプの発見－
23. Keiichi Inoue, Hikaru Ono, Rei Abe-Yoshizumi, Susumu Yoshizawa, Hiroyasu Ito, Kazuhiro Kogure and Hideki Kandori. A light-driven sodium pump in marine bacteria. Nature Communications, 4, Article number: 1678. (2013) DOI: 10.1038/ncomms2689
プレスリリース: 36年ぶりの新発見！光でナトリウムイオンを輸送するポンプ型タンパク質！！
22. Sanghwa Park, Jaeho Song, Susumu Yoshizawa, Ayoung Choi, Jang-Cheon Cho and Kazuhiro Kogure. Rubrivirga marina, gen. nov., sp. nov., a member of the family Rhodothermaceae isolated from the deep sea. International Journal of Systematic and Evolutionary Microbiology, 63, 2229-2233. (2013) DOI: 10.1099/ijs.0.046318-0
21. Sanghwa Park, Susumu Yoshizawa, Yuki Muramatsu, Yasuyoshi Nakagawa, Akira Yokota and Kazuhiro Kogure. Aureicoccus marinus gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from Pacific ocean. International Journal of Systematic and Evolutionary Microbiology, 63, 1885-1890. (2013) DOI: 10.1099/ijs.0.045104-0
20. Sanghwa Park, Susumu Yoshizawa, Chiura hiroshi xavier, Yuki Muramatsu,Yasuyoshi Nakagawa, Kazuhiro Kogure and Akira Yokota. Nonlabens marina sp. nov., a novel marine bacterium isolated from Pacific Ocean. Antonie Van Leeuwenhoek, 102, 669-676. (2012) DOI: 10.1007/s10482-012-9765-4
19. Susumu Yoshizawa, Yasuhiro Tsuruya, Youhei Fukui, Tomoo Sawabe, Akira Yokota, Kazuhiro Kogure, Melissa Higgins, Jeremy Carson and Fabiano L. Thompson. Vibrio jasicida sp. nov., a member of the Harveyi clade, from marine animals (packhorse lobster, abalone, and Atlantic salmon). International Journal of Systematic and Evolutionary Microbiology, 62, 1864-1870. (2012) DOI: 10.1099/ijs.0.025916-0.
18. Sanghwa Park, Susumu Yoshizawa, Kentaro Inomata, Kazuhiro Kogure and Akira Yokota. Halioglobus japonicus gen. nov., sp. nov., and Halioglobus pacificus sp. nov., within the class Gammaproteobacteria, isolated from seawater. International Journal of Systematic and Evolutionary Microbiology, 62, 1784-1789. (2012) DOI: 10.1099/ijs.0.031443-0.
17. Keisuke Yamada, Akira Kawanabe, Susumu Yoshizawa, Kentaro Inoue, Kazuhiro Kogure and Hideki Kandori. Anomalous pH Effect of Blue Proteorhodopsin. The Journal of Physical Chemistry Letters, 3, 800-804. (2012) DOI: 10.1021/jz3000257
16. Susumu Yoshizawa, Akira Kawanabe, Hiroyasu Ito, Hideki Kandori and Kazuhiro Kogure. Diversity and functional analysis of proteorhodopsin in marine Flavobacteria. Environmental Microbiology, 14, 1240-1248. (2012) DOI: 10.1111/j.1462-2920.2012.02702.x
プレスリリース: 海洋生態系の理解を根本から覆す新しい光エネルギー利用機構 その直接測定に成功
15. Susumu Yoshizawa, Hajime Karatani, Minoru Wada and Kazuhiro Kogure. Vibrio azureus emits blue-shifted light via an accessory blue fluorescent protein. FEMS microbiology letters, 329, 61-68. (2012) DOI: 10.1111/j.1574-6968.2012.02507.x
14. Sanghwa Park, Susumu Yoshizawa, Kentaro Inomata, Kazuhiro Kogure and Akira Yokota. Aureitalea marina gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater. International Journal of Systematic and Evolutionary Microbiology 62, 912-916. (2012) DOI: 10.1099/ijs.0.031450-0
13. Sanghwa Park, Susumu Yoshizawa, Kazuhiro Kogure and Akira Yokota. Oceanicoccus sagamiensis gen. nov., sp. nov., a gamma-proteobacterium isolated from sea water of Sagami Bay in Japan. The Journal of Microbiology, 49, 233-237. (2011) DOI: 10.1007/s12275-011-0368-y
12. Sanghwa Park, Susumu Yoshizawa, Kazuhiro Kogure and Akira Yokota. Rubricoccus marinus gen. nov., sp. nov., of the family ‘Rhodothermaceae’, isolated from seawater. International Journal of Systematic and Evolutionary Microbiology, 61, 2069-2072. (2011) DOI: 10.1099/ijs.0.026294-0
11. Sanghwa Park, Susumu Yoshizawa, Koji Hamasaki, Kazuhiro Kogure and Akira Yokota. Psychrosphaera saromensis gen. nov., sp. nov., within the family Pseudalteromonadaceae, isolated from Lake Saroma Japan. The Journal of General and Applied Microbiology, 56, 475-480. (2010) DOI: 10.2323/jgam.56.475
10. Susumu Yoshizawa, Hajime Karatani, Minoru Wada, Akira Yokota, and Kazuhiro Kogure. Aliivibrio sifiae sp. nov., luminous marine bacteria isolated from seawater. The Journal of General and Applied Microbiology, 56, 509-518. (2010) DOI: 10.2323/jgam.56.509
9. Susumu Yoshizawa, Minoru Wada, Akira Yokota, and Kazuhiro Kogure. Vibrio sagamiensis sp. nov., luminous marine bacteria isolated from sea water. The Journal of General and Applied Microbiology, 56, 499-507. (2010) DOI: 10.2323/jgam.56.499
8. Noriaki Yoshida, Masahiko Nishimura, Katsuyuki Inoue, Susumu Yoshizawa, Eriko Kamiya, Akito Taniguchi, Koji Hamasaki and Kazuhiro Kogure. Analysis of Nanoplankton Community Structure using Flow Sorting and Molecular Technique. Microbes and Environments, 24, 297-304. (2009) DOI: 10.1264/jsme2.ME09150
7. Susumu Yoshizawa, Minoru Wada, Kumiko Kita-Tsukamoto, Akira Yokota and Kazuhiro Kogure. Photobacterium aquimaris sp. nov., luminous marine bacteria isolated from seawater. International Journal of Systematic and Evolutionary Microbiology, 59, 1438-1442. (2009) DOI: 10.1099/ijs.0.004309-0
6. Susumu Yoshizawa, Minoru Wada, Kumiko Kita-Tsukamoto, Eiko Ikemoto, Akira Yokota and Kazuhiro Kogure. Vibrio azureus sp. nov., a luminous marine bacterium isolated from seawater. International Journal of Systematic and Evolutionary Microbiology, 59, 1645-1649. (2009) DOI: 10.1099/ijs.0.004283-0
5. Nurul Huda Khan, Mahbuba Ahsan, Susumu Yoshizawa, Shoichi Hosoya, Akira Yokota and Kazuhiro Kogure. Multilocus sequence typing and phylogenetic analyses of Pseudomonas aeruginosa Isolates from the ocean. Applied and Environmental Microbiology, 74, 6194-6205. (2008) DOI: 10.1128/AEM.02322-07
4. Kumiko Kita-Tsukamoto, Minoru Wada, Katomi Yao, Akiko Kamiya, Susumu Yoshizawa, Nami Uchiyama & Kazuhiro Kogure. Rapid identification of marine bioluminescent bacteria by amplified 16S ribosomal RNA gene restriction analysis. FEMS Microbiology Letters, 256, 298-303. (2006) DOI: 10.1111/j.1574-6968.2006.00129.x
3. Minoru Wada, Akiko Kamiya, Nami Uchiyama, Susumu Yoshizawa, Kumiko Kita-Tsukamoto, Kou Ikejima, Reiko Yu, Chiaki Imada, Hajime Karatani, Naoki Mizuno, Yuzuru Suzuki, Mutsumi Nishida and Kazuhiro Kogure. LuxA gene of light organ symbionts of the bioluminescent fish Acropoma japonicum (Acropomatidae) and Siphamia versicolor (Apogonidae) forms a lineage closely related to that of Photobacterium leiognathi subsp. Mandapamensis. FEMS Microbiology Letters, 260, 186-192. (2006) DOI: 10.1111/j.1574-6968.2006.00322.x
2. Hajime Karatani, Shoji Matsumoto, Koji Miyata, Susumu Yoshizawa, Yuki Suhama and Satoshi Hirayama. Bioluminescence Color Modulation of Vibrio fischeri Strain Y1 Coupled with Alterable Levels of Endogenous Yellow Fluorescent Protein and Its Fluorescence Imaging. Photochemistry and Photobiology, 82, 587–592. (2006) DOI: 10.1562/2005-06-29-RA-597
1. Hajime Karatani, Susumu Yoshizawa and Satoshi Hirayama. Oxygen triggering reversible modulation of Vibrio fischeri Strain Y1 bioluminescence in Vivo. Photochemistry and Photobiology, 79, 120-125. (2004) DOI: 10.1111/j.1751-1097.2004.tb09866.x
Book Chapters
Hajime Karatani, Susumu Yoshizawa and Satoshi Hirayam. Effect of oxygen and hydrogen ion on the modulation of the bioluminescence from luminous bacteria. Bioluminescence and Chemiluminescence (Edited by A. Tsuji, M. matsumoto, M. Maeda, L. J. Kricka and P. E. Stanley), World Scientific Publishing, River Edge, New Jersey, pp. 75-78. (2005)
Essays and Others
吉澤晋. 海水に含まれるDNAを調べれば微生物からクジラの分布まで分かる？（淡青vol43, PDF）(2021)
吉澤晋. 「東京湾のバクテリア研究」なら今からでも第一人者になれる!? (Webページ) (2020)
吉澤晋. 生物と光の関係をひもとく（PDF）(2020)
吉澤晋. これからの『新領域創成科学研究科』について（座談会） （広報誌「創成」へのリンク）(2019)
吉澤晋. 「青」, 岩波書店『広辞苑を３倍楽しむ その2』, P2-3, (2018). amazon
吉澤晋. 「微生物型ロドプシンの多様な機能」, 『光合成研究』, 26(2), P149-154, (2016).
吉澤晋. 「広辞苑を３倍楽しむ“青”」, 岩波書店『科学』, 86(5), P433, (2016).
吉澤晋. 「一般ポスドクのMIT留学体験記：海外でしか得られない情報・技術なんてほとんどない時代に留学って必要？」, 『日本微生物生態学会和文誌』, 30(1), (2015).
木暮一啓・吉澤晋.「ロドプシン-生物による新しい光エネルギー利用システム」,『日本海洋学会ニュースレター』,4(3), p3-4, (2014).
吉澤晋.「海洋細菌の光利用」, 『環境と微生物の事典』, 朝倉書店, P157-158, (2014). amazon
木暮一啓・吉澤晋.「海洋細菌が広げるロドプシン研究」, 『Blue Earth Special Issue -学術研究船「淡青丸」のすべて』, p7, (2013).
吉澤晋.「ISME13の感想」, 『日本微生物生態学会誌』, 26(1), p17, (2011).
吉澤晋.「微生物生態学会若手会交流会報告」, 『日本微生物生態学会和文誌』, 26(1), p22, (2011).
吉澤晋.「“近く”て“近い”国、韓国」, 『日本微生物生態学会和文誌』, 24(2), p73-75, (2009).
吉澤晋.「再び発光細菌」, 『日本微生物生態学会誌』, 24(1), p7-8, (2009).