Hirata, T, Tohsato, Y., Itoga, H., Shioi, G., Kiyonari, H., Oka, S., Fujimori, T., Onami, S. (2021) NeuroGT: a brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons. Cell Reports Methods, 1 100012. DOI: 10.1016/j.crmeth.2021.100012
Tran-Anh, K., Zhang, J., Nguyen-Minh, V.T., Fujita, H., Hirata, T., and Sugihara, I. (2020) Common origin of the cerebellar dual somatotopic areas revealed by tracking embryonic Purkinje cell clusters with birthdate tagging. eNeuro ENEURO.0251-20.2020 DOI: 10.1523/ENEURO.0251-20.2020
Zhang, J., Tran-Anh, K., Hirata, T., and Sugihara, I. (2020) Striped distribution pattern of Purkinje cells of different birthdates in the mouse cerebellar cortex studied with the Neurog2-CreER transgenic line. Neuroscience (in press) DOI: 10.1016/j.neuroscience.2020.07.028
Zhu, Y., Hirata, T., Mackay, F., and Murakami, F. (2020) Chemokine receptor CXCR7 non-cell-autonomously controls pontine neuronal migration and nucleus formation. Sci Rep. 10, 11830 DOI: 10.1038/s41598-020-68852-z
Hatanaka, Y., Kawasaki, T., Abe, T., Shioi, G., Kohno, T., Hattori, M., Sakakibara, A., Kawaguchi, Y., and Hirata, T. (2019) Semaphorin 6A–Plexin A2/A4 interactions with radial glia regulate migration termination of superficial layer cortical neurons. iScience 21, 359-374. DOI: 10.1016/j.isci.2019.10.034
Hirata, T., Shioi, G., Abe, T., Kiyonari, H., Kato, S., Kobayashi, K., Mori, K., and Kawasaki, T. (2019) A novel birthdate-labeling method reveals segregated parallel projections of mitral and external tufted cells in the main olfactory system. eNeuro 6(6) DOI:10.1523/ENEURO.0234-19.2019
Ito, F., Matsumoto, T., and Hirata, T. (2019) Frequent non-random shifts in the temporal sequence of developmental landmark events during teleost evolutionary diversification. Evo. Dev. 21: 120-134. doi: 10.1111/ede.12288
Yamauchi, K., Yamazaki, M., Abe, M., Sakimura, K., Lickert, H., Kawasaki, T., Murakami, F., and Hirata, T. (2017) Netrin-1 derived from the ventricular zone, but not the floor plate, directs hindbrain commissural axons to the ventral midline. Sci. Rep. 7, 11992. doi: 10.1038/s41598-017-12269-8. (20 September 2017)
Noguchi, K., Ishikawa, R., Kawaguchi, M., Miyoshi, K., Kawasaki, T., Hirata, T., Fukui, M., Kuratani, S., Tanaka, M. and Murakami, Y. (2017) Expression patterns of Sema3A in developing amniote limbs: with reference to the diversification of peripheral nerve innervation. Dev. Growth Differ. 59, 270-285 doi: 10.1111/dgd.12364.
Sasaki, A., Ide, S., Kawamoto, Y., Bando, T., Murata, Y., Shimura, M., Yamada, K., Hirata, A., Nokihara, K., Hirata, T., Sugiyama, H. and Maeshima, K. (2016) Telomere visualization in tissue sections using pyrrole-imidazole polyamide probes. Sci. Rep. 6, 29261. doi: 10.1038/srep29261.
de Frutos, C.A., Bouvier, G., Arai, Y., Thion, M.S., Lokmane, L., Maryama, K., Garcia-Dominguez, M., Charnay, P., Hirata, T., Riethmacher, D., Grove, E.A., Tissir, F., Casado, M., Pierani, A. and Garel, S. (2016) Reallocation of olfactory Cajal-Retzius cells shapes neocortex architecture. Neuron 92, 435-448. doi: 10.1016/j.neuron.2016.09.02
Zhu, Y., Matsumoto, T., Nagasawa, T., Mackay, F. and Murakami, F. (2016) Chemokine signaling controls integrity of radial glial scaffold in developing spinal cord and consequential proper position of boundary cap cells. J. Neurosci. 35, 9211-9224. doi: 10.1523/JNEUROSCI.0156-15.2015.
Kanatani, S., Honda, T., Aramaki, M., Hayashi, K., Kubo, K., Ishida, M., Tanaka, D.H., Kawauchi, T., Sekine, K., Kusuzawa, S., Kawasaki, T., Hirata, T., Tabata, H., Uhlén, P., and Nakajima, K. (2015): The COUP-TFII/Neuropilin-2 is a molecular switch steering diencephalon-derived GABAergic neurons in the developing mouse brain. Proc Natl Acad Sci USA 112, E4985-4994. doi: 10.1073/pnas.1420701112.
Mita, S., Monasterio-Schrader, P., Fünfschilling, U., Kawasaki, T., Mizuno, H., Iwasato, T., Nave, K.-A., Werner, H.B. and Hirata, T. (2015) Transcallosal projections require glycoprotein M6-dependent neurite growth and guidance. Cerebral Cortex 25, 4111-4125. doi: 10.1093/cercor/bhu129
Suzuki, I. K. and Hirata, T. (2014) A common developmental plan for neocortical gene-expressing neurons in the pallium of the domestic chicken Gallus gallus domesticus and the Chinese softshell turtle Pelodiscus sinensis. Front. Neuroanat. April 8 1-17. doi: 10.3389/fnana.2014.00020
Ohtani, Y., Miyata, M., Hashimoto, K., Tabata, T., Kishimoto, Y., Fukaya, M., Kase, D., Kassai, H., Nakao. K., Hirata, T., Watanabe, M., Kano, M. and Aiba, A. (2014) The synaptic targeting of mGluR1 by its carboxyl-terminal domain is crucial for cerebellar function. J. Neurosci. 34 2702-2712. doi: 10.1523/JNEUROSCI.3542-13.2014.
Hirata, T., Kumada, T., Kawasaki, T., Furukawa, T., Aiba, A., Conquet, F., Saga, Y. and Fukuda, A. (2012) Guidepost neurons for the lateral olfactory tract: expression of metabotropic glutamate receptor 1 and Iinnervation by glutamatergic olfactory bulb axons. Dev. Neurobiol. 72 1559-1576. doi: 10.1002/dneu.22030.
Suzuki, I.K., Kawasaki, T., Gojobori, T. and Hirata, T. (2012) The temporal sequence of the mammalian neocortical neurogenetic program drives mediolateral pattern in the chick pallium. Dev. Cell 22 863-870. doi:10.1016/j.devcel.2012.01.004
Sato, Y., Watanabe, N., Fukushima, N., Mita, S. and Hirata, T. (2011) Actin-independent behavior and membrane deformation exhibited by the four-transmembrane protein M6a. PLoS One 6 e26702. 1-13. doi:10.1371/journal.pone.0026702.
Sato, Y., Iketani, M., Kurihara, Y., Yamaguchi, M., Yamashita, N., Nakamura, F., Arie, Y., Kawasaki, T., Hirata, T., Abe, T., Kiyonari, H., Strittmatter, S.M., Goshima, Y. and Takei, K. (2011) Cartilage acidic protein-1B (LOTUS), an endogenous Nogo receptor antagonist for axon tract formation. Science 333 769-773.
Sato, Y., Mita, S., Fukushima, N., Fujisawa, H., Saga, Y. and Hirata, T. (2011) Induction of axon growth arrest without growth cone collapse through the N-terminal region of four-transmembrane glycoprotein M6a. Dev. Neurobiol. 71 733-746. doi: 10.1002/dneu.20941
Yamatani, H., Kawasaki,, T., Mita,, S., Inagaki,, N. and Hirata, T. (2010) Proteomics Analysis of the Temporal Changes in Axonal Proteins during Maturation. Dev. Neurobiol. 70 523-537. doi: 10.1002/dneu.20794.
Nakadate, N., Uchida, K., Shikata, K., Yoshimura, S., Azuma, M., Hirata, T., Konishi, H., Kiyama, H. and Tachibana, T. (2009) The formation of argpyrimidine, a methylglyoxal–arginine adduct, in the nucleus of neural cells. Biochem. Biophys. Res. Comm. 378 209–212.
Ito, K., Kawasaki, T., Takashima, S., Matsuda, I., Aiba, A. and Hirata, T. (2008) Semaphorin 3F confines ventral tangential migration of lateral olfactory tract neurons onto the telencephalon surface. J. Neurosci. 28 4414-4422. doi: 10.1523/JNEUROSCI.0372-08.2008.
Takagi, K., Okuda-Ashitaka, E., Mabuchi, T., Katano, T., Ohnishi, T., Matsumura, S., Abe, T., Hirata, T., Minami, T. and Ito, S. (2008) Involvement of stem cell factor and its receptor tyrosine kinase c-kit in pain regulation. Neuroscience 153,1278-1288.
Oginuma, M., Hirata, T. and Saga, Y. (2008) Identification of presomitic mesoderm (PSM)-specific Mesp1 enhancer and generation of a PSM-specific Mesp1/Mesp2-null mouse using BAC-based rescue technology. Mech. Dev. 125, 432-440.
Fouquet, C., Di Meglio, T., Ma, L., Kawasaki, T., Long, H., Hirata, T., Tessier-Lavigne, M., Chedotal, A. and Nguyen-Ba-Charvet, K.T. (2007) Robo1 and robo2 control the development of the lateral olfactory tract. J. Neurosci. 27 3037-3045.
Gil, V., Nicolas, O., Mingorance, A., Urena, J. M., Tang, B.L., Hirata, T., Saez-Valero, J., Ferrer, I., Soriano, E. and del Rio, J. A. (2006) Nogo-A and Nogo receptor expression in the human hippocampus in neuronal aging and Alzhheimer’s disease. J. Neuropathol. Exp. Neurol. 65, 433-444.
Kawasaki, T., Ito, K. and Hirata, T. (2006) Netrin 1 regulates ventral tangential migration of guidepost neurons in the lateral olfactory tract. Development 133, 845-853. PM!D:16439477
Koma, Y., Ito, A., Watabe, K., Hirata, T., Mizuki, M., Kitamura, T., Kanakura, Y. and Kitamura, Y. (2005) Distinct role for c-kit receptor tyrosine kinase and SgIGSF adhesion molecule in attachment of mast cells to fibroblasts. Lab. Invest. 85, 426-435.
Kawasaki, T., Takagi, Y., Yamatani, H. and Hirata, T. (2005) Systematic screening and identification of the antigens recognized by monoclonal antibodies raised against the developing lateral olfactory tract . J. Neurobiol. 62, 330-340.
Aizawa, H., Sato, Y., Maekawa, M., Fujisawa, H., Hirata, T. and Yuasa, S. (2004) Development of the amygdalohypothalamic projection in the mouse embryonic forebrain. Anat. Embryol. 208, 249-264.
Tozaki, H., Tanaka, S. and Hirata, T. (2004) Theoretical consideration of olfactory axon projection with an activity-dependent neural network model. Mol. Cell. Neurosci. 26, 503-517.
Yamatani, H., Sato, Y., Fujisawa, H. and Hirata, T. (2004) Chronotopic organization of olfactory bulb axons in the lateral olfactory tract. J. Comp. Neurol. 475, 247-260.
Tozaki, H., Kawasaki, T., Takagi, Y. and Hirata, T. (2002) Expression of Nogo protein by growing axons in the developing nervous system. Mol. Brain Res. 104, 111-119.
Kawasaki, T., Bekku, Y., Suto, F., Kitsukawa, T., Taniguchi, M., Nagatsu, I., Nagatsu, T., Itoh, K., Yagi, T. and Fujisawa, H. (2002) Requirement of neuropilin 1-mediated Sema3A signals in patterning of the sympathetic nervous system. Development 129, 671-680
Hirata, T., Nomura, T., Takagi, Y., Sato, Y., Tomioka, N., Fujisawa, H. and Osumi, N. (2002) Mosaic development of the olfactory cortex with Pax6-dependent and -independent components. Dev. Brain Res. 136, 17-26.
Hirata, T., Fujisawa, H, Wu, J. Y. and Rao, Y. (2001) Short-range guidance of olfactory bulb axons is independent of repulsive factor slit. J. Neurosci. 21, 2373-2379.
Tomioka, N., Osumi, N., Sato, Y., Inoue, T., Nakamura, S., Fujisawa, H. and Hirata, T. (2000) Neocortical origin and tangential migration of guidepost neurons in the lateral olfactory tract. J. Neurosci. 20, 5802-5812.
Hatanaka, Y., and Hirata, T. (2020) How do cortical excitatory neurons terminate their migration at the right place? Critical roles of environmental elements. review article, Front. Cell Dev. Biol. 23, October 2020 DOI: 10.3389/fcell.2020.596708
Hirata, T. and Iwai, L. (2018) Timing Matters: a strategy for neurons to make diverse connections. review article Neurosci. Res. (in press) doi: 10.1016/j.neures.2018.09.006.
Nomura, T. and Hirata, T. (2016) The neocortical homologues in nonmammalian amniotes: bridging the hierarchical concepts of homology through comparative neurogenesis. In: Jon Kaas, I (ed.), Evolution of Nervous Systems, 2nd edition, vol. 2, pp.195-204. Elsevier. ISBN: 978-0-12-804096-6
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Hirata, T. and Fujisawa, H. (1999) Environmental control of collateral branching and target invasion of mitral cell axons during development. J. Neurobiol. 38, 93-104.
Sato, Y., Hirata, T., Ogawa, M. and Fujisawa, H. (1998) Requirement for early-generated neurons recognized by monoclonal antibody lot1 in the formation of lateral olfactory tract. J. Neurosci. 18, 7800-7810.
Kitsukawa, T., Shimizu, M., Sanbo, M., Hirata, T., Taniguchi, M., Bekku, Y., Yagi, T., and Fujisawa, H. (1997) Neuropilin-semaphorin III/D-mediated chemorepulsive signals play a crucial role in peripheral nerve projection in mice. Neuron 19, 995-1005.
Hirata, T. and Fujisawa, H. (1997) Cortex-specific distribution of membrane-bound factors that promote neurite outgrowth of mitral cells in culture. J. Neurobiol. 32, 415-425.
Kameyama, T., Murakami, Y., Suto, F., Kawakami, A., Takagi, S., Hirata, T. and Fujisawa, H. (1996) Identification of a neuronal cell surface molecule, plexin, in mice. Biochem. Biophys. Res. Commun. 226, 524-529.
Kameyama, T., Murakami, Y., Suto, F., Kawakami, A., Takagi, S., Hirata, T. and Fujisawa, H. (1996) Identification of plexin family molecules in mice. Biochem. Biophys. Res. Commun. 226, 396-402.
Sugisaki, N., Hirata, T., Naruse, I., Kawakami, A., Kitsukawa, T. and Fujisawa, H. (1996) Positional cues that are strictly localized in the telencephalon induce preferential growth of mitral cell axons. J. Neurobiol. 29, 127-137
Fujisawa, H., Takagi, S. and Hirata. T. (1995) Growth-associated expression of a membrane protein, neuropilin, in Xenopus optic nerve fibers. Dev. Neurosci. 17, 343-349.
Satoda, M., Takagi, S., Ohta, K., Hirata, T. and Fujisawa, H. (1995) Differential expression of two cell surface proteins, neuropilin and plexin, in Xenopus olfactory axon subclasses. J. Neurosci. 15, 942-955.
Hirata, T., Kasugai, T., Morii, E., Hirota, S., Nomura, S., Fujisawa, H. and Kitamura, Y. (1995) Characterization of c-kit-positive neurons in the dorsal root ganglion of mouse. Dev. Brain Res. 85, 201-211.
Kim, H.-M, Hirota, S., Chumg, H.-T., Onoue, H., Ito, A., Morii, E., Hirata, T., Shigeo, O., Osada, S., Kitamura, Y. and Nomura, S. (1994) PKCδ gene expression is delayed in postnatal central nervous system of mi/mi mice. J. Mol. Neurosci. 4, 245-253.
Hirata, T., Morii, E., Kasugai, T., Tsujimura, T., Hirota, S., Kanakura, Y., Nomura, S. and Kitamura, Y. (1993) Stem cell factor induces outgrowth of c-kit-positive neurites and supports the survival of c-kit-positive neurons in dorsal root ganglia of mouse embryos. Development 119, 49-56.
Hirata, T., Takagi, S. and Fujisawa, H. (1993) The membrane protein A5, a putative neuronal recognition molecule, promotes neurite outgrowth. Neurosci. Res. 17, 159-169.
Morii, E., Hirata, T. , HirotaS., Kosaka, J., Kim, H.-M., Ito, A., Sugimoto, T., Kitamura, Y. and Nomura, S. (1993) Types of neurons that express mRNA of c-kit and its ligand in developing murine cerebellum. Acta Histochem. Cytochem. 26, 359-364.
Kim, H.-M., Hirota, S., Onoue, H., Hirata, T., Suzuki, K., Ohno, S., Kuroki, T., Kitamura, Y. and Nomura, S. (1992) Localization and developmental expression of a novel protein kinase Cδgene. Dev. Brain Res. 70, 239-244.
Takagi, S., Hirata , T., Agata K., Mochii, M., Eguchi, G. and Fujisawa, H. (1991) The A5 antigen, a candidate for the neuronal recognition molecule, has homologies to complement components and coagulation factors. Neuron 7, 295-307.
Fujioka, M., Hirata, T. and Shimamoto, N. (1991) Requirement for the βγ-pyrophosphate bond of ATP in a stage between transcription initiation and elongation by Escherichia coli RNA polymerase. Biochemistry 30, 1801-1807.
Hirata, T., Kubota, I., Iwasawa, N., Fujisawa, Y., Muneoka, Y. and Kobayashi, M. (1989) Effects of Mytilus inhibitory peptides on mechanical responses of various molluscan muscles. Comp. Biochem. Phyiol. 93C, 381-388.
Hirata, T., Kubota, I., Imada, M. and Muneoka, Y. (1989) Pharmacology of relaxing response of Mytilus smooth muscle to the catch-relaxing peptide. Comp. Biochem. Physiol. 92C, 289-295.
Hirata, T., Kubota, I., Imada, M., Muneoka, Y. and Kobayashi, M. (1989) Effect of the catch-relaxing peptide on molluscan muscles. Comp. Biochem. Physiol. 92C, 289-288.
Hirata, T., Kubota, I., Iwasawa, N., Takabatake, I., Ikeda, T. and Muneoka, Y. (1988) Structures and actions of Mytilus inhibitory peptides. Biochem. Biophys. Res. Commun. 152, 1376-1382.
Hirata, T., Kubota, I., Takabatake, I., Kawahara, A., Shimamoto, N. and Muneoka. Y. (1987) Catch-relaxing peptide isolated from Mytilus pedal ganglia. Brain Res. 422, 374-376.