こちらに引用等を含めてまとめてあります：Google Scholar Citations
i. Masato Ohtsuka, Jurai Imafuku, Shuho Hori, Aki Kurosaki, Ayaka Nakamura, Tsubasa Nakahara, Takashi Yahata, Kolari Bhat, Steven Papastefan, So Nakagawa, Rolen M Quadros, Hiromi Miura, Channabasavaiah B Gurumurthy. Delivering mRNAs to mouse tissues using the SEND system. bioRxiv doi: https://www.biorxiv.org/content/10.1101/2023.01.28.522652v1
95. Goto Y, Ahn Y M, Toyoda M, Hamana H, Jin Y, Aritsu Y, Nakama T, Tajima Y, Maddumage J C, Li H, Kitamatsu M, Kishi H, Yonekawa A, Jayasinghe D, Shimono N, Nagasaki Y, Minami R, Toya T, Sekiya N, Tomita Y, Chatzileontiadou D S M, Nakata H, Nakagawa S, Sakagami T, Ueno T, Gras S, Motozono C*. (2025) Molecular basis of potent antiviral HLA-C-restricted CD8+ T cell response to an immunodominant SARS-CoV-2 nucleocapsid epitope. Nature Communications 16(1): 8062. doi: 10.1038/s41467-025-63288-3 Web PDF
94. Yanagiya R, Kato H, Ninomiya A, Ueno M, Kanamori A, Miyatake Y, Oka M, Ishii K, Matsuura T, Nakagawa S, Hirao A, Onizuka M, Kotani A*. (2025) Revised model for cell cycle regulation by iron: differential roles between transferrin and ferritin. Redox Biology 85: 103727. doi: 10.1016/j.redox.2025.103727 Web PDF
93. Hussein O, Mahgoub M, Shichijo T, Nakagawa S, Tanabe J, Akari H, Miura T, Matsuoka M, Yasunaga J. (2025) Evolution of primate T-cell leukemia virus type 1 accessory genes and functional divergence of its antisense proteins. PLoS Pathogen. 21(5):e1013158. doi: 10.1371/journal.ppat.1013158. PMID: 40344170. Web PDF
92. Kitao K*, Ichiyanagi K, Nakagawa S*. (2025) Birth of protein-coding exons by ancient domestication of LINE-1 retrotransposon. Genome Research 35: 1287-1300. doi: 10.1101/gr.280007.124 Web PDF
91. Yanagiya R, Nakagawa S*, Onizuka M, Kotani A. (2025) Aberrant expression of human endogenous retrovirus K9-derived elements is associated with better clinical outcome of acute myelocytic leukemia. Retrovirology 22: 4. doi: 10.1186/s12977-025-00661-6 Web PDF
90. Wang T, Wu J*, Nakagawa S, Yonezawa T, Liu Z, Zhang X, Wang H, Li Y, Zhang T*. (2025) Evolutionary analysis and population dynamics in the global transmission of Kaposi's sarcoma-associated herpesvirus. Archives of Virology 170(5): 92. doi: 10.1007/s00705-025-06259-9. Web PDF
89. Wu J, Kryukov K, Takeuchi SJ, Nakagawa S*. (2025) SGV-Caller: SARS-CoV-2 Genome Variation Caller. Heliyon 11(4):e42613. doi: 10.1016/j.heliyon.2025.e42613. Web PDF
88. Takada K†, Nakagawa S†*, Kryukov K†, Ozawa M, Watanabe T*. (2024) Metagenomic analysis of the gut microbiota of hooded cranes (Grus monacha) on the Izumi plain in Japan. FEBS Open Bio. 14(12): 1972-1984. doi: 10.1002/2211-5463.13881 Web PDF
87. Tanaka E, Koyanagi-Aoi M, Nakagawa S, Shimode S, Yamada H, Terai Y, Aoi T* (2024) Effect of a FOXO1 inhibitor on trophoblast differentiation from human pluripotent stem cells and ERV-associated gene expression. Regenerative Therapy 26: 729-740. doi: 10.1016/j.reth.2024.08.020 Web PDF
86. Harakawa K, Kawarai S, Kryukov K, Nakagawa S, Moriya S, Imakawa K.* (2024) Buccal Swab Samples from Japanese Brown Cattle Fed with Limonite Reveal Altered Rumen Microbiome. Animals 14: 1968. doi: 10.3390/ani14131968 Web PDF
85. Yanagiya R, Miyatake Y, Watanabe N, Shimizu T, Kanamori A, Ueno M, Okabe S, Carreras J, Nakayama S, Hasegawa A, Kameda K, Kamakura T, Nakagawa S, Yamauchi T, Maeda T, Ishii K, Matsuura T, Handa H, Hirao A, Ishizawa K, Onizuka M, Mashima T, Nakamura N, Ando K, Kotani A.* (2024) Amino acid influx via LAT1 regulates iron demand and sensitivity to PPMX-T003 of aggressive natural killer cell leukemia. Leukemia 38: 1731–1741. doi: 10.1038/s41375-024-02296-6. PMID: 38914715 Web PDF
84. Sakaguchi S*, Nakano T, Nakagawa S*, (2024) NeoRdRp2 with improved seed data, annotations, and scoring. Frontiers in Virology 4: 1378695. DOI: 10.3389/fviro.2024.1378695 Web PDF
83. Takada K, Orba Y, Kida Y, Wu J, Ono C, Matsuura Y, Nakagawa S, Sawa H, Watanabe T. (2024) Genes involved in the limited spread of SARS-CoV-2 in the lower respiratory airways of hamsters may be associated with adaptive evolution. Journal of Virology. 16:e0178423 DOI: 10.1128/jvi.01784-23. Web PDF
82. Oka A*, Hadano S, Ueda MT, Nakagawa S, Komaki G, Ando T. (2024) Rare CRHR2 and GRM8 variants identified as candidate factors associated with eating disorders in Japanese patients by whole exome sequencing. Heliyon 10: e28643. DOI: doi.org/10.1016/j.heliyon.2024.e28643. Web PDF
81. Konno Y, Uriu K, Chikata T, Takada T, Kurita JI, Ueda MT, Islam S, Yang Tan BJ, Ito J, Aso H, Kumata R, Williamson C, Iwami S, Takiguchi M, Nishimura Y, Morita E, Satou Y, Nakagawa S, Koyanagi Y, Sato K*. (2024) Two-step evolution of HIV-1 budding system leading to pandemic in the human population. Cell Reports 43(2): 113697. DOI: 10.1016/j.celrep.2024.113697. Web PDF
80. Nakagawa S†*, Katayama T†, Jin L†, Wu J, Kryukov K, Oyachi R, Takeuchi JS, Fujisawa T, Asano S, Komatsu M, Onami J, Abe T*, Arita M*. (2023) SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan. Genes & Genetic Systems 98(5): 221-237. DOI: 10.1266/ggs.23-00085 Web PDF
79. Kimura I, Yamasoba D, Nasser H, Ito H, Zahradnik J, Wu J, Fujita S, Uriu K, Sasaki J, Tamura T, Suzuki R, Deguchi S, Plianchaisuk A, Yoshimatsu K, Kazuma Y, Mitoma S, Schreiber G, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Takaori-Kondo A; Genotype to Phenotype Japan (G2P-Japan) Consortium; Ito J, Shirakawa K, Takayama K, Irie T, Hashiguchi T, Nakagawa S*, Fukuhara T*, Saito A*, Ikeda T*, Sato K*. (2023) Multiple mutations of SARS-CoV-2 Omicron BA.2 variant orchestrate its virological characteristics. Journal of Virology 97(10): e0101123. DOI: 10.1128/jvi.01011-23 Web PDF
78. Kameda K, Yanagiya R, Miyatake Y, Carreras J, Higuchi H, Murayama H, Ishida T, Ito A, Iida S, Fukuhara N, Harigae H, Fujioka Y, Takahashi N, Wada H, Ishida F, Nakazawa H, Ishihara R, Murakami Y, Tagawa H, Matsuura T, Nakagawa S, Iwabuchi S, Hashimoto S, Imadome KI, Nakamura N, Ishizawa K, Kanda Y, Ando K, Kotani A.* (2023) Hepatic niche leads to aggressive natural killer cell leukemia proliferation through transferrin-transferrin receptor 1 axis. Blood 142(4): 352-364. DOI: 10.1182/blood.2022018597 Web PDF
77. Kitao K*, Shoji H, Miyazawa T, Nakagawa S*. (2023) Dynamic evolution of retroviral envelope genes in egg-laying mammalian genomes. Molecular Biology and Evolution. 40(5): msad090. DOI: 10.1093/molbev/msad090 Web PDF
76. Takada K, Ueda MT, Shichinohe S, Kida Y, Ono C, Matsuura Y, Watanabe T*, Nakagawa S*. (2023) Genomic diversity of SARS-CoV-2 can be accelerated by mutations in the nsp14 gene. iScience 26(3): 106210. DOI: 10.1016/j.isci.2023.106210 Web PDF
75. Ohkura S*, Horie M, Shimizu M, Nakagawa S, Osanai H, Miyagawa Y, Morita R. (2023) Characterization of Megabat-Favored, CA-Dependent Susceptibility to Retrovirus Infection. Journal of Virology 97(3): e0180322. DOI: 10.1128/jvi.01803-22 Web PDF
74. Shoji H†, Kitao K†, Miyazawa T*, Nakagawa S*. (2023) Potentially reduced fusogenicity of syncytin-2 in New World monkeys. FEBS Open Bio 13(3): 459-467. DOI: 10.1002/2211-5463.13555 Web PDF
73. Kimura I†, Yamasoba D†, Nasser H†, Zahradnik J†, Kosugi Y†, Wu J†, Nagata K, Uriu K, Tanaka YL, Ito J, Shimizu R, Tan TS, Butlertanaka EP, Asakura H, Sadamasu K, Yoshimura K, Ueno K, Takaori-Kondo A, Schreiber G, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Toyoda M, Shirakawa K, Irie T, Saito A*, Nakagawa S*, Ikeda T*, Sato K*. (2022) The SARS-CoV-2 spike S375F mutation characterizes the Omicron BA.1 variant. iScience 25(12): 105720. DOI: 10.1016/j.isci.2022.105720 Web PDF
72. Kitao K, Miyazawa T*, Nakagawa S*. (2022) Monotreme-Specific Conserved Putative Proteins Derived from Retroviral Reverse Transcriptase. Virus Evolution 8(2): veac084. DOI:10.1093/ve/veac084 Web PDF
71. Sakaguchi S, Urayama S, Takaki Y, Wu H, Suzuki Y, Nunoura T, Nakano T*, Nakagawa S*. (2022) NeoRdRp: A Comprehensive Dataset for Identifying RNA-dependent RNA Polymerases of Various RNA Viruses from Metatranscriptomic Data. Microbes and Environments 37(3): ME22001. DOI: 10.1264/jsme2.ME22001 Web PDF
70. Miyake A, Ngo MH, Wulandari S, Shimojima M, Nakagawa S, Kawasaki J, Nishigaki K*. (2022) Convergent evolution of antiviral machinery derived from endogenous retrovirus truncated envelope genes in multiple species. Proceedings of the National Academy of Sciences of the United States of America 119(26): e2114441119. DOI: doi.org/10.1073/pnas.2114441119 Web PDF
69. Takeuchi K*, Ikeda Y, Senda M, Harada A, Okuwaki K, Fukuzawa K, Nakagawa S, Yu HY, Nagase L, Imai M, Sasaki M, Lo YH, Ito D, Osaka N, Fujii Y, Sasaki AT*, Senda T*. (2022) The GTP responsiveness of PI5P4Kβ evolved from a compromised trade-off between activity and specificity. Structure 30(6): 886-899. DOI: doi.org/10.1016/j.str.2022.04.004 Web PDF
68. Komiya S, Matsuo Y*, Nakagawa S, Morimoto Y, Kryukov K, Okada H, Hirota K. (2022) MinION, a portable long-read sequencer, enables rapid vaginal microbiota analysis in a clinical setting. BMC Medical Genomics. 15(1): 68. DOI: 10.1186/s12920-022-01218-8 Web PDF
67. Sakai H*, Sawada Y, Tokunaga N, Tanaka K, Nakagawa S, Sakakibara I, Ono Y, Fukada S, Ohkawa Y, Kikugawa T, Saika T, Imai, Y*. (2022) Uhrf1 governs the proliferation and differentiation of muscle satellite cells. iScience 25(3): 103928. DOI: 10.1016/j.isci.2022.103928 Web PDF
66. Saito A, Irie T, Suzuki R, Maemura T, Nasser H, Uriu K, Kosugi Y, Shirakawa K, Sadamasu K, Kimura I, Ito J, Wu J, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Loeber S, Tsuda M, Wang L, Ozono S, Butlertanaka EP, Tanaka YL, Shimizu R, Shimizu K, Yoshimatsu K, Kawabata R, Sakaguchi T, Tokunaga K, Yoshida I, Asakura H, Nagashima M, Kazuma Y, Nomura R, Horisawa Y, Yoshimura K, Takaori-Kondo A, Imai M; Genotype to Phenotype Japan (G2P-Japan) Consortium, Tanaka S*, Nakagawa S*, Ikeda T*, Fukuhara T*, Kawaoka Y*, Sato K.* (2022) Enhanced fusogenicity and pathogenicity of SARS-CoV-2 Delta P681R mutation. Nature. 602(7896): 300–306. DOI: 10.1038/s41586-021-04266-9 Web PDF
Media: Science, The Medical News
65. Kimura I, Kosugi Y, Wu J, Zahradnik J, Yamasoba D, Butlertanaka EP, Tanaka YL, Uriu K, Liu Y, Morizako N, Shirakawa K, Kazuma Y, Nomura R, Horisawa Y, Tokunaga K, Ueno T, Takaori-Kondo A, Schreiber G, Arase H, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Motozono C, Saito A, Nakagawa S*, Sato K*. (2022) The SARS-CoV-2 Lambda variant exhibits enhanced infectivity and immune resistance. Cell Reports 38(2): 110218. DOI: 10.1016/j.celrep.2021.110218 Web PDF
64. Kitao K, Sumiyoshi A, Nakagawa S, Matsumoto Y, Mizuno T, Miyazawa T* (2021) Systematic identification of endogenous retroviral protein-coding genes expressed in canine oral malignant melanoma. Frontiers in Virology. 1: 785678. DOI: 10.3389/fviro.2021.785678. Web PDF
63. Kitao K, Nakagawa S, Miyazawa T* (2021) An ancient retroviral RNA element hidden in mammalian genomes and its involvement in co-opted retroviral gene regulation. Retrovirology 18(1): 36 (2021). DOI: 10.1186/s12977-021-00580-2. Web PDF
Media: 日刊工業新聞、毎日新聞
62. Uriu K, Kimura I, Shirakawa K, Takaori-Kondo A, Nakada TA, Kaneda A, Nakagawa S, Sato K*; Genotype to Phenotype Japan (G2P-Japan) Consortium. (2021) Neutralization of the SARS-CoV-2 Mu Variant by Convalescent and Vaccine Serum. New England Journal of Medicine. 385(25): 2397-2399. DOI: 10.1056/NEJMc2114706 Web PDF
61. Hirabayashi A, Yahara K, Mitsuhashi S, Nakagawa S, Imanishi T, Ha VTT, Nguyen AV, Nguyen ST, Shibayama K, Suzuki M* (2021) Plasmid analysis of NDM metallo-β-lactamase-producing Enterobacterales isolated in Vietnam. PLOS ONE. 16(7): e0231119. DOI: 10.1371/journal.pone.0231119 Web PDF
60. Motozono C, Toyoda M†, Zahradnik J†, Saito A†, Nasser H†, Tan TS, Ngare I, Kimura I, Uriu K, Kosugi Y, Yue Y, Shimizu R, Ito J, Torii S, Yonekawa A, Shimono N, Nagasaki Y, Minami R, Toya T, Sekiya N, Fukuhara T, Matsuura Y, Schreiber G, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Ikeda T*, Nakagawa S*, Ueno T*, Sato K*. (2021) SARS-CoV-2 spike L452R variant evades cellular immunity and increases infectivity. Cell Host & Microbe 29(7): 1124-1136. PMID: 34171266 PMCID: PMC8205251 DOI: 10.1016/j.chom.2021.06.006 Web PDF
Media: 読売新聞, NewsMedical.net
59. Matsuzawa A, Lee J, Nakagawa S, Itoh J, Takahashi Ueda M, Mitsuhashi S, Kochi Y, Kaneko-Ishino T, Ishino F.* (2021) HERV-derived ERVPb1 is conserved in Simiiformes, exhibiting expression in hematopoietic cell lineages including macro-phages. International Journal of Molecular Sciences. 22(9): 4504. PMID: 33925887 DOI: 10.3390/ijms22094504 Web PDF
58. Kimura I, Konno Y, Uriu K, Hopfensperge K, Sauter D, Nakagawa S, Sato K* (2021) Sarbecovirus ORF6 proteins hamper the Induction of interferon signaling by blocking mRNA nuclear export. Cell Reports. 34: 108916. PMID: 33765414 PMCID: PMC7953434 DOI: 10.1016/j.celrep.2021.108916 Web PDF
57. Mitsuhashi S, Nakagawa S, Sasaki-Honda M, Sakurai H, Frith MC, Mitsuhashi H* (2021) Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells. Human Molecular Genetics 30(7): 552–563. PMID: 33693705 DOI: 10.1093/hmg/ddab063 Web PDF
56. Shiraishi Y, Kryukov K, Tomomatsu K, Sakamaki F, Inoue S, Nakagawa S, Imanishi T, Asano K* (2021) Diagnosis of pleural empyema/parapneumonic effusion by next-generation sequencing. Infectious Diseases 53(6): 450-459. PMID: 33689538 DOI: 10.1080/23744235.2021.1892178 Web PDF
55. Chikuma S*, Yamanaka S†, Nakagawa S†, Ueda MT†, Hayabuchi H, Tokifuji Y, Kanayama M, Okamura T, Arase H, Yoshimura A. (2021) TRIM28 expression on dendritic cells prevents excessive T cell priming by silencing endogenous retrovirus. Journal of Immunology 206(7):1528-1539. PMID: 33619215 DOI: 10.4049/jimmunol.2001003 Web PDF
Media: 日経バイオテク
54. Ohno A, Umezawa K, Asai S, Kryukov K, Nakagawa S, Miyachi H, Imanishi T* (2021) Rapid profiling of drug-resistant bacteria using DNA-binding dyes and a nanopore-based DNA sequencer. Scientific Reports 11: 3436. PMID: 33564026 DOI: 10.1038/s41598-021-82903-z Web PDF
53. Matsuo Y*, Komiya S, Yasumizu Y, Yasuoka Y, Mizushima K, Takagi Y, Kryukov K, Fukuda A, Morimoto Y, Naito Y, Okada H, Bono H, Nakagawa S, Hirota K. (2021) Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution. BMC Microbiology 21: 35. PMID: 33499799 PMCID: PMC7836573 DOI: 10.1186/s12866-021-02094-5 Web PDF
52. Kojima S, Yoshikawa K, Ito J, Nakagawa S, Parrish NF, Horie M, Kawano S*, Tomonaga K.* (2021) Virus-like insertions with sequence signatures similar to those of endogenous nonretroviral RNA viruses in the human genome. Proceedings of the National Academy of Sciences of the United States of America 118(5): e2010758118. PMID: 33495343 DOI: 10.1073/pnas.2010758118 Web PDF
Media: Phys.org
51. Nakagawa S†*, Kawashima M†, Miyatake Y†, Kudo K, Kotaki R, Ando K, Kotani A.* (2021) Expression of ERV3-1 in leukocytes of acute myelogenous leukemia patients. Gene 773: 145363. PMID: 33338509 DOI: 10.1016/j.gene.2020.145363 Web PDF
50. Orba, Y.*, Matsuno, K., Nakao, R., Kryukov, K., Saito, Y., Kawamori, F., Vega, A.L., Watanabe, T., Maemura, T., Sasaki, M., Hall, W.W., Hall, R.A., Pereira, J.A., Nakagawa, S., Sawa, H. (2021) Diverse mosquito specific flaviviruses in the Bolivian Amazon basin. Journal of General Virology. 102(3): 001518. PMID: 33416463 DOI: 10.1099/jgv.0.001518 Web PDF
49. Ueda, M.T., Kryukov, K., Mitsuhashi, S, Mitsuhashi, H, Imanishi, T, and Nakagawa, S.* (2020) Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains. Mobile DNA 11: 29. PMID: 32963593 PMCID: PMC7499964 DOI: 10.1186/s13100-020-00224-w Web PDF
48. Konno Y†, Kimura I†, Uriu K, Fukushi M, Irie T, Koyanagi Y, Sauter D, Gifford RJ; USFQ-COVID19 Consortium, Nakagawa S, Sato K.* (2020) SARS-CoV-2 ORF3b is a potent interferon antagonist whose activity is further increased by a naturally occurring elongation variant. Cell Reports 32: 108185. PMID: 32941788 DOI: 10.1016/j.celrep.2020.108185 Web PDF
Media: 日本経済新聞、The Scientist、Forbes、STAT
47. Nakano, Y., Yamamoto, K., Ueda, M. T., Soper, A., Konno, Y., Kimura, I., Uriu, K., Kumata, R., Aso, H., Misawa, N., Nagaoka, S., Shimizu, S., Mitsumune, K., Kosugi, Y., Juarez-Fernandez, G., Ito, J., Nakagawa, S., Ikeda, T., Koyanagi, Y., Harris, R. S. and Sato, K.* (2020) A role for gorilla APOBEC3G in shaping lentivirus evolution including transmission to humans. PLoS Pathogens 16(9): e1008812. PMID: 32913367 DOI: 10.1371/journal.ppat.1008812 Web PDF
46. Kotaki R, Kawashima M, Yamaguchi A, Suzuki N, Koyama-Nasu R, Ogiya D, Okuyama K, Yamamoto Y, Takamatsu M, Kurosaki N, Ando K, Murata A, Ohtsuka M, Nakagawa S, Katagiri K, Kotani A. (2020) Overexpression of miR-669m inhibits erythroblast differentiation. Scientific Reports 10(1):13554. PMID: 32782283 DOI: 10.1038/s41598-020-70442-y Web PDF
45. Saito M*, Hasegawa H*, Yamauchi S, Nakagawa S, Sasaki D, Nao N, Tanio M, Wada Y, Matsudaira T, Momose H, Kuramitsu M, Yamagishi M, Nakashima M, Nakahata S, Iha H, Ogata M, Imaizumi Y, Uchimaru K, Morishita K, Watanabe T, Miyazaki Y, Yanagihara K. (2020) A high-throughput detection method for the clonality of Human T-cell leukemia virus type-1-infected cells in vivo. International Journal of Hematology 112(3):300-306. PMID: 32725607 DOI: 10.1007/s12185-020-02935-5 Web PDF
44. Kryukov, K.*, Ueda, M.T., Nakagawa, S. Imanishi, T. (2020) Sequence Compression Benchmark (SCB) database-A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences. GigaScience 9(7): giaa072. PMID: 32627830 DOI: 10.1093/gigascience/giaa072 Web PDF
43. Oka A*, Takagi A, Komiyama E, Yoshihara N, Mano S, Hosomichi K, Suzuki S, Haida Y, Motosugi N, Hatanaka T, Kimura M, Ueda MT, Nakagawa, S, Miura H, Ohtsuka M, Tanaka M, Komiyama T, Otomo A, Hadano S, Mabuchi T, Beck S, Inoko H, Ikeda S.* (2020) Alopecia areata susceptibility variant in MHC region impacts expressions of genes contributing to hair keratinization and is involved in hair loss. EBioMedicine 57:102810. PMID: 32580135 DOI: 10.1016/j.ebiom.2020.102810 Web PDF
42. Otomo, A.*†, Ueda, M.T.†, Fujie, T., Hasebe, A., Suematsu, Y., Okamura, Y., Takeoka, S., Hadano, S., Nakagawa, S.* (2020) Efficient differentiation and polarization of primary cultured neurons on poly(lactic acid) scaffolds with microgrooved structures. Scientific Reports 10: 6716. PMID: 32317746 DOI: 10.1038/s41598-020-63537-z Web PDF
Media: 大学広報、日経産業新聞（5/14）、科学新聞（5/15）
41. Ishihara, T., Watanabe, N., Inoue, S., Aoki, H., Tsuji, T., Yamamoto, B., Yanagi, H., Oki, M., Kryukov, K., Nakagawa, S., Inokuchi, S., Ozawa, H., Imanishi, T.* (2020) Usefulness of next-generation DNA sequencing for the diagnosis of urinary tract infection. Drug Discoveries & Therapeutics 14(1):42-49. PMID: 32101813 DOI: 10.5582/ddt.2020.01000 Web PDF
40. Hashimoto-Gotoh, A.†, Yoshikawa, R.†, Nakagawa, S., Okamoto, M., Miyazawa, T.* (2020) Phylogenetic analyses of simian foamy virus from Yakushima macaques (Macaca fuscata yakui) reveal ancient sub-speciation event took place in Japanese macaques. Gene 734: 144382. PMID: 31978513 DOI: 10.1016/j.gene.2020.144382 Web PDF
39. Sakaguchi, S.*, Nakagawa, S., Mitsuhashi, S., Ogawa, M., Sugiyama, K., Tamukai, K., Koide, R., Katayama, Y., Nakano, T., Makino, S., Imanishi, T., Miyazawa, T., Mizutani, T. (2020) Molecular characterization of feline paramyxovirus in Japanese cat populations. Archives of Virology 165(2): 413-418. PMID: 31823012 DOI: 10.1007/s00705-019-04480-x Web PDF
38. Nakagawa, S., Inoue, S.*, Kryukov, K., Yamagishi, J., Ohno, A., Hayashida, K., Nakazwe, R., Kalumbi, M., Mwenya, D., Asami, N., Sugimoto, C., Mutengo, M. M., Imanishi, T.* (2019) Rapid sequencing-based diagnosis of infectious bacterial species from meningitis patients in Zambia. Clinical & Translational Immunology 8: e1087. PMID: 31709051 PMCID: PMC6831930 DOI: 10.1002/cti2.1087 Web PDF
37. Mukai, Y., Tomita, Y., Kryukov, K., Nakagawa, S., Ozawa, M., Matsui, T., Tomonaga, K., Imanishi, T., Kawaoka, Y., Watanabe, T.*, Horie, M.* (2019) Identification of a distinct lineage of aviadenovirus from crane feces. Virus Genes 55(6): 815-824. PMID: 31549291 DOI: 10.1007/s11262-019-01703-w Web PDF
36. Tanaka, H., Matsuo, Y., Nakagawa, S., Nishi, K., Okamoto, A., Kai, S., Iwai, T., Tabata, Y., Tajima, T., Satoh, M., Kryukov, K., Imanishi, T., Hirota, K.* (2019) Real-time diagnostic analysis of MinION™-based metagenomic sequencing in clinical microbiology evaluation: a case report. JA Clinical Reports 5:24. PMID: 32025980 DOI: 10.1186/s40981-019-0244-z Web PDF
35. Kryukov, K.*, Ueda, M.T., Nakagawa, S. and Imanishi, T. (2019) Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences. Bioinformatics 35(19): 3826–3828. PMID: 30799504 DOI: 10.1093/bioinformatics/btz144 Web PDF
34. Kai, S., Matsuo, Y.*, Nakagawa, S., Kryukov, K., Matsukawa, S., Tanaka, H., Iwai, T., Imanishi, T., and Hirota K.* (2019) Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer. FEBS Open Bio, 9: 548-557. PMID: 30868063 PMCID: PMC6396348 DOI: 10.1002/2211-5463.12590 Web PDF
The most downloaded article was published in 2019
33. Koide, R., Yoshikawa, R., Okamoto, M.*, Sakaguchi, S., Suzuki, J., Isa, T., Nakagawa, S., Sakawaki, H., Miura, T., Miyazawa, T.* (2019) Experimental infection of Japanese macaques with simian retrovirus 5. Journal of General Virology, 100(2): 266-277. PMID: 30608228 DOI: 10.1099/jgv.0.001199 Web PDF
32. Kryukov, K., Ueda, M.T., Imanishi, T. and Nakagawa, S.* (2019) Systematic survey of non-retroviral virus-like elements in eukaryotic genomes. Virus Research, 262:30-36. PMID: 29425804 DOI: 10.1016/j.virusres.2018.02.002. Web PDF
31. Sato, K., Otomo, A., Ueda, M.T., Hiratsuka, Y., Suzuki-Utsunomiya, K., Sugiyama, J., Murakoshi, S., Mitsui, S., Ono, S., Nakagawa, S., Shang, H.F., and Hadano, S.* (2018) Altered oligomeric states in pathogenic ALS2 variants associated with juvenile motor neuron diseases cause loss of ALS2-mediated endosomal function. Journal of Biological Chemistry, 293(44): 17135-17153. PMID: 30224357 PMCID: PMC6222102 DOI: 10.1074/jbc.RA118.003849 Web PDF
30. Watanabe, N., Kryukov, K., Nakagawa, S., Takeuchi, J.S., Takeshita, M., Kirimura, Y., Mitsuhashi, S., Ishihara, T., Aoki, H., Inokuchi, S., Imanishi, T., and Inoue, S.* (2018) Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis. PLOS ONE, 13(8): e0202049. PMID: 30110400 DOI: 10.1371/journal.pone.0202049 Web PDF
29. Konno, Y., Nagaoka, S., Kimura, I., Yamamoto, K., Kagawa, Y., Kumata, R., Aso, H., Ueda, M.T., Nakagawa, S., Kobayashi, T., Koyanagi, Y. and Sato, K.* (2018) New World feline APOBEC3 potently controls inter-genus lentiviral transmission. Retrovirology, 15: 31. PMID: 29636069 PMCID: PMC5894237 DOI: 10.1186/s12977-018-0414-5 Web PDF
28. Konno, Y.†, Nagaoka, S.†, Kimura, I.†, Ueda, M.T., Kumata, R., Ito, J., Nakagawa, S., Kobayashi, T., Koyanagi, Y. and Sato, K.* (2018) A naturally occurring feline APOBEC3 variant that loses anti-lentiviral activity by lacking two amino acid residues. Journal of General Virology, 99(5): 704-709. PMID: 29611801 DOI: 10.1099/jgv.0.001046 Web PDF
27. Kurosaki, Y.†*, Ueda, M.T.†, Nakano, Y., Yasuda, J., Koyanagi, Y., Sato, K. and Nakagawa, S.* (2018) Different effects of two mutations on the infectivity of Ebola virus glycoprotein in nine mammalian species. Journal of General Virology. 99(2): 181-186. PMID: 29300152 DOI: 10.1099/jgv.0.000999 Web PDF
26. Mitsuhashi,S.*, Nakagawa, S., Ueda M.T., Imanishi, T., Frith M. C., and Mitsuhashi, H. (2017) Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy. Scientific Reports, 7: 14789. PMID: 29093467 PMCID: PMC5665936 DOI: 10.1038/s41598-017-13712-6 Web PDF
25. Sakurai, T., Nakagawa, S., Bai, H., Bai, R., Kusama, K., Ideta, A., Aoyagi, Y., Kaneko, K., Iga, K., Yasuda, J., Miyazawa, T., and Imakawa, K.* (2017) Novel endogenous retrovirus-derived transcript expressed in the bovine placenta is regulated by WNT signaling. Biochemical Journal, 474: 3499-3512. PMID: 28899944 PMCID: PMC5633919 DOI: 10.1042/BCJ20170531 Web PDF
24. Mitsuhashi,S.†, Kryukov, K.†, Nakagawa, S.†, Takeuchi, J.S., Shiraishi, Y., Asano, K. and Imanishi, T.* (2017) A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer. Scientific Reports,7: 5657. PMID: 29093467 PMCID: PMC5665936 DOI: 10.1038/s41598-017-13712-6 Web PDF
報道：Oxford Nanopore Technologies社のofficial site、日経産業新聞、日刊工業新聞、化学工業日報、Nature Japan、大学広報
23. Oka, A.*, Asano, Y., Hasegawa, M., Fujimoto, M., Ishikawa, O., Kuwana, M., Kawaguchi, Y., Yamamoto, T., Takahashi, H., Goto, D., Endo, H., Jinnin, M., Mano, S., Hosomichi, K., Mabuchi, T., Ueda, M.T., Nakagawa, S., Beck, S., Bahram, S., Takehara, K., Sato, S. and Ihn, H. (2017) RXRB is a MHC-encoded susceptibility gene associated with anti-topoisomerase I antibody-positive systemic sclerosis. Journal of Investigative Dermatology, 137(9):1878-1886. PMID: 28506627 DOI: 10.1016/j.jid.2017.04.028 Web PDF
22. Nakagawa, S.*, Niimura, Y. and Gojobori, T. (2017) Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine–Dalgarno sequence in prokaryotes. Nucleic Acids Research, 45(7): 3922-3931. PMID: 28334743 PMCID: PMC5397173 DOI: 10.1093/nar/gkx124 Web PDF
21. Ueda, M.T.†*, Kurosaki, Y.†, Izumi, T., Nakano, Y., Oloniniyi, O.K., Yasuda, J., Koyanagi, Y., Sato, K.* and Nakagawa, S.* (2017) Functional mutations in spike glycoprotein of Zaire ebolavirus associated with an increase in infection efficiency. Genes to Cells, 22(2):148-159. PMID: 28084671 DOI: 10.1111/gtc.12463 Web PDF
報道：日経産業新聞、日刊工業新聞など
Most Accessed Articles published in 2016-2017に選ばれています、大学広報でも紹介されました
20. Nakagawa, S.* and Takahashi, M.U. (2016) gEVE: a genome-based endogenous viral element database provides comprehensive viral protein-coding sequences in mammalian genomes. Database (Oxford), 2016: baw087. PMID: 27242033 PMCID: PMC4885607 DOI: 10.1093/database/baw087 Web PDF
19. Akihito, Akishinonomiya, F., Ikeda, Y., Aizawa, M., Nakagawa, S., Umehara, Y., Yonezawa, T., Mano, S., Hasegawa, M., Nakabo, T. and Gojobori, T.* (2016) Speciation of two gobioid species, Pterogobius elapoides and Pterogobius zonoleucus revealed by multi-locus nuclear and mitochondrial DNA analyses. Gene 576(2): 593-602. PMID: 26475939 DOI: 10.1016/j.gene.2015.10.014 Web PDF
18. Miyaho, R.N., Nakagawa, S.*, Hashimoto-Gotoh, A., Nakaya, Y., Shimode, S., Sakaguchi, S., Yoshikawa, R., Takahashi, M.U., Miyazawa, T.* (2015) Susceptibility of domestic animals to a pseudotype virus bearing RD-114 virus envelope protein. Gene 567(2): 189-195.
PMID: 25936996 DOI: 10.1016/j.gene.2015.04.079 Web PDF
Please see the correction as well: Web PDF
17. Kawamura, M., Watanabe, S., Odahara, Y., Nakagawa, S., Endo, Y., Tsujimoto, H., Nishigaki, K.* (2015) Genetic diversity in the feline leukemia virus gag gene. Virus Research 204:74-81. PMID: 25892717 DOI: 10.1016/j.virusres.2015.04.008 Web PDF
16. Yoshikawa, R., Okamoto, M., Sakaguchi, S., Nakagawa, S., Miura, T., Hirai, H., Miyazawa, T.* (2015) Simian Retrovirus 4 Induces Lethal Acute Thrombocytopenia in Japanese Macaques. Journal of Virology 89:3965-3975. PMID: 25609821 PMCID: PMC4403420 DOI: 10.1128/JVI.03611-14 Web PDF
報道：中日新聞など
15. Shimode, S., Nakagawa, S., Miyazawa, T.* (2015) Multiple invasions of infectious retrovirus in cat genomes. Scientific Reports 5, 8164. PMID: 25641657 PMCID: PMC4313119 DOI: 10.1038/srep08164 Web PDF
報道：日本経済新聞、産経新聞、東京新聞、ハフィントン・ポスト、サイエンスポータル、毎日新聞、マイナビニュース、NHK「サイエンスＺＥＲＯ」（2015年8月2日放送）、フジテレビ系列「ニュースJAPAN」など、またNature Japanの注目の論文として紹介された
14. Yoshikawa, R.†, Nakagawa, S.†*, Okamura, M. and Miyazawa, T*. (2014) Construction of an infectious clone of simian foamy virus of Japanese macaque (SFVjm) and phylogenetic analyses of SFVjm isolates. Gene 548(1):149-154. PMID: 25017058 DOI: 10.1016/j.gene.2014.07.025 Web PDF
13. Sakaguchi, S., Nakagawa, S., Yoshikawa, R., Kuwahara, C., Hagiwara, H., Asai, K., Kawakami, K., Yamamoto, Y., Ogawa, M. and Miyazawa, T.* (2014) Genetic diversity of feline morbilliviruses isolated in Japan. Journal of General Virology 95(7):1464-1468. PMID: 24728711 DOI: 10.1099/vir.0.065029-0 Web PDF
報道：NHK「サイエンスZERO」（2016年6月5日放送）
12. Shimode, S.†, Nakagawa, S.†, Yoshikawa, R., Shojima, T. and Miyazawa, T.* (2014) Heterogeneity of koala retrovirus isolates. FEBS Letters 588(1):41-46. PMID: 24239536 DOI: 10.1016/j.febslet.2013.10.046 Web PDF
9で報告した新規コアラ白血病ウイルス（KoRV-J）と、ほぼ同時期に発表されたKoRV-Bが同じsubtypeであることを報告した。11. Sakurai, T.†, Nakagawa, S.†, Kim, MS.†, Bai, H., Bai, R., Li, JY., Min, KS., Ideta, A., Aoyagi, Y. and Imakawa, K.* (2013) Transcriptional regulation of two conceptus interferon tau genes expressed in Japanese Black cattle during peri-implantation period. PLoS ONE 8(11), e80427. PMID: 24348910 PMCID: PMC3857836 DOI: 10.1371/journal.pone.0080427 Web PDF
ウシのトロフォブラスト細胞で発現するインターフェロンタウの発現を調べたところ2つのisotypeが発現している可能性を示した。10. Nakaya, Y., Koshi, K., Nakagawa, S., Hashizume, K. and Miyazawa, T.* (2013) Fematrin-1 is involved in fetomaternal cell-to-cell fusion in Bovinae placenta and contributed to diversity of ruminant placentation. Journal of Virology 87(19):10563-72. PMID: 23864631 PMCID: PMC3807419 DOI: 10.1128/JVI.01398-13 Web PDF
ウシの胎盤を構成する多核細胞の発生にBERV-Pのenv由来のFematrin-1が関与することを明らかにした（胎児由来の二核細胞が母体由来の細胞との融合に関与する）。報道：Nature Japan Jobs 特集記事、日刊工業新聞、京都新聞、マイナビニュース（Yahoo!ニュースにも転載）、Optronicsなど
9. Shojima, T., Yoshikawa, R., Hoshino, S., Shimode, S., Nakagawa, S., Ohata, T., Nakaoka, R. and Miyazawa, T.* (2013) Identification of a Novel Subgroup of Koala Retrovirus from Koalas in Japanese Zoos. Journal of Virology 87(17):9943-9948. PMID: 23824806 PMCID: PMC3754120 DOI: 10.1128/JVI.01385-13 Web PDF
新規のコアラ白血病ウイルス（KoRV-J）を発見した。報道：毎日新聞（Yahoo!ニュースにも転載）など
8. Nakagawa, S.†, Gisselbrecht, S. S.†, Rogers, J. M.†, Hartl, D. L.* and Bulyk, M. L.* (2013) DNA binding specificity changes in the evolution of forkhead transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 110(30):12349-12354. PMID: 23836653 PMCID: PMC3725104 DOI: 10.1073/pnas.1310430110 Web PDF
Forkhead転写因子の結合するDNA配列が進化的にダイナミックに変化し、進化的に独立に共通するDNA配列を認識するようになった7. Watanabe, S., Kawamura, M., Anai, Y., Ochi, H., Odahara, Y., Nakagawa, S., Endo, Y., Tsujimoto, H. and Nishigaki, K.* (2013) Phylogenetic and Structural Diversity in the Feline Leukemia Virus Env Gene. PLoS ONE 8(4): e61009. PMID: 23593376 PMCID: PMC3623909 DOI: 10.1371/journal.pone.0061009 Web PDF
6. Nakagawa, S., Bai, H., Sakurai, T., Nakaya, Y., Konno, T., Miyazawa, T., Gojobori, T. and Imakawa, K.* (2013) Dynamic evolution of endogenous retrovirus-derived genes expressed in bovine conceptuses during the period of placentation. Genome Biology and Evolution 5(2):296-306. PMID: 23335121 PMCID: PMC3590765 DOI: 10.1093/gbe/evt007 Web PDF
5. Takeda, E., Nakagawa, S., Nakaya, Y., Tanaka, A., Miyazawa, T. and Yasuda, J.* (2012) Identification and Functional Analysis of Three Isoforms of Bovine BST-2. PLoS ONE 7(7): e41483. PMID: 22911799 PMCID: PMC3401110 DOI: 10.1371/journal.pone.0041483 Web PDF
4. Anai, Y.†, Ochi, H.†, Watanabe, S.†, Nakagawa, S., Kawamura, M., Gojobori, T. and Nishigaki, K.* (2012) Infectious endogenous retroviruses in cats and emergence of recombinant viruses. Journal of Virology 86(16):8634-44. PMID: 22674983 PMCID: PMC3421742 DOI: 10.1128/JVI.00280-12 Web PDF
3. Nakagawa, S., Niimura, Y., Miura, K. and Gojobori, T.* (2010) Dynamic evolution of translation initiation mechanisms in prokaryotes. Proceedings of the National Academy of Sciences of the United States of America 107(14):6382-7. PMID: 20308567 PMCID: PMC2851962 DOI: 10.1073/pnas.1002036107 Web PDF
2. Hase, T., Tanaka, H., Suzuki, Y., Nakagawa, S. and Kitano, H.* (2009) Structure of protein interaction networks and their implications on drug design. PLoS Computational Biology 5(10): e1000550. PMID: 19876376 PMCID: PMC2760708 DOI: 10.1371/journal.pcbi.1000550 Web PDF
1. Nakagawa, S., Niimura, Y., Gojobori, T., Tanaka, H.* and Miura, K. (2008) Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nucleic Acids Research, 36(3):861-871. PMID: 18086709 PMCID: PMC2241899 DOI: 10.1093/nar/gkm1102 Web PDF
13. Nakagawa S*, Sakaguchi S. (2024) Exploring the hidden world of RNA viruses with a transformer-based tool. Patterns 5(11): 101095. Web PDF
12. Charon J, Olendraite I, Forgia M, Chong LC, Hillary LS, Roux S, Kupczok A, Debat HJ, Sakaguchi S, Tahzima R, Nakagawa S, Babaian A, et al. (2024) Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities. Frontiers in Virology 4: 1378695. Web PDF
11. Nakagawa S*, Sakaguchi S, Ogura A, Mineta K, Endo T, Suzuki Y, Gojobori T. (2023) Current trends in RNA virus detection through metatranscriptome sequencing data. FEBS Open Bio 13(6): 992-1000. Web PDF
10. Takeuchi K*, Senda M, Ikeda Y, Okuwaki K, Fukuzawa K, Nakagawa S, Sasaki M, Sasaki AT*, Senda T* (2023) Functional molecular evolution of a GTP sensing kinase: PI5P4Kβ. FEBS Journal in press. Web PDF
9. Kryukov K, Imanishi T, Nakagawa S*. (2023) Nanopore Sequencing Data Analysis of 16S rRNA Genes Using the GenomeSync-GSTK System. Methods in Molecular Biology 2632:215-226. DOI: 10.1007/978-1-0716-2996-3_15 Web PDF
8. Kryukov K, Jin L, Nakagawa S*. (2022) Efficient compression of SARS-CoV-2 genome data using Nucleotide Archival Format (NAF). Patterns 3(9): 100562. DOI: 10.1016/j.patter.2022.100562 Web PDF
7. Imakawa K*, Kusama K, Kaneko-Ishino T, Nakagawa S, Kitao K, Miyazawa T, Ishino F. (2022) Endogenous Retroviruses and Placental Evolution, Development, and Diversity. Cells 11: 2458. DOI: 10.3390/cells11152458 Web PDF
6. Nakagawa, S.*, Miyazawa, T*. (2020) Genome evolution of SARS-CoV-2 and its virological characteristics. Inflammation and Regeneration, 40: 17. PMID: 33349272 DOI: 10.1186/s41232-020-00126-7 Web PDF
5. Asogawa, M.*, Ohno, A., Nakagawa, S., Ochiai, E., Katahira, Y., Sudo, M., Osawa, M., Sugisawa, M., Imanishi, T.* (2020) Human short tandem repeat identification using a nanopore-based DNA sequencer: a pilot study. Journal of Human Genetics 65(1):21-24. PMID: 31649301 DOI: 10.1038/s10038-019-0688-z Web
4. Ueda, M.T.*, Nakagawa, S. (2017) Transcription Factor Genes. Evolution of the Human Genome I: The Genome and Genes., 241-263, Springer Japan KK. Web PDF
3. Imakawa, K.*, Nakagawa, S. (2017) The Phylogeny of Placental Evolution Through Dynamic Integrations of Retrotransposons. Progress in Molecular Biology and Translational Science, 145; 89–109. Web PDF
2. Imakawa, K.*, Nakagawa, S. and Miyazawa, T. (2015) Baton pass hypothesis: Successive incorporation of unconserved endogenous retroviral genes for placentation during mammalian evolution. Genes to Cells. 20, 771-788. Web PDF
1. Gojobori, T.*, Nakagawa, S. and Clemente, J. C. (2009) DNA Sequence Analysis (Version 2). Encyclopedia of Life Sciences, John Wiley & Sons, Inc Web PDF
24. 中川草、坂口翔一 RNAウイルスハンティングの新時代 実験医学 43(13): 2093-2097. 2025. Web
23. 中川草 大規模塩基配列解析が明らかにするRNA ウイルスの多様性と進化 NEUROINFECTION 29(1): 54-57. 2024. Web PDF
22. 中川草 EVE研究に役立つデータベース 実験医学 41(14): 2264-2266. 2023. Web
21. 中川草 新型コロナウイルスのゲノム解析 実験医学 40(6): 887-891. 2022. Web
20. KRYUKOV Kirill, 中川草、松尾貞行、廣田喜一、今西規 GenomeSync + GSTK法 実験医学別冊「メタゲノムデータ解析」 Web
19. 中川草 ナノポアシークエンサーMinIONを活用したウイルス解析 実験医学別冊「ロングリードWET & DRY 解析ガイド」 220-224. 2021. Web
18. 中川草 新型コロナウイルスのゲノム 遺伝子医学 11(2): 143-148, 2021.
17. 中川草 新型コロナウイルスのゲノム進化 実験医学増刊「パンデミック時代の感染症研究」 39(2): 178-184. 2021. Web
16. 中川草 新型コロナウイルスの遺伝子と変異 生物の科学 遺伝 75(1): 47-51, 2021. Web
15. 大野歩、中川草、KRYUKOV Kirill、今西規 ナノポアDNAシークエンサーを用いた迅速な細菌同定法 臨床化学 49: 265-270, 2020. Web
14. 大槻海人、中川草、今川和彦 胎盤の進化や多様性に関与するレトロトランスポゾン Journal of Mammalian Ova Research 37(2): 95-106, 2020. Web PDF
13. 中川草 大量シークエンス解析によって明らかになるウイルスの素顔 〜新型コロナウイルスを含めて〜 ウイルス 70 (1): 45 - 48, 2020.
12. 中川草 内在性ウイルス配列のデータベースを活用したバイオインフォマティクス解析 医学のあゆみ 273 (12): 1149 - 1153. 2020. Web
11. 宮沢孝幸、中川草 新型コロナウイルスSARS-CoV-2の比較ウイルス学と比較ゲノム解析 実験医学 38 (8): 1338-1347, 2020. Web
10. 今西規、中川草 新しいゲノム解析システムによる細菌感染症診断 医学のあゆみ 267 (4): 299-300. 2018. Web
9. 中川草、今西規 ナノポアシーケンサーを活用した感染症細菌叢ゲノムの迅速解析 バイオサイエンスとインダストリー(B&I) 76 (3): 234-235. 2018. Web
8. 三橋里美、中川草、上田真保子、今西規、Martin C Frith、三橋弘明 リピート数が関与する疾患の診断に向けてーサブテロメア領域のD4Z4マクロサテライトリピートを読む 実験医学 36 (1): 44 - 48. 2018. Web
7. 中川草、三橋里美、Kryukov Kirill、今西規 迅速な細菌種の組成解析 実験医学 36 (1) 32 - 37. 2018. Web
6. 宮沢孝幸、下出紗弓、中川草 RD-114物語：ネコの移動の歴史を探るレトロウイルス ウイルス, 66 (1): 21-30. 2016. PMID: 28484175 DOI: 10.2222/jsv.66.21 Web PDF
5. 今川和彦、中川草、草間和哉 胎盤と内在性レトロウイルス ウイルス, 66 (1): 1-10. 2016. PMID: 28484172 DOI: 10.2222/jsv.66.1 Web PDF
4. 宮沢孝幸、中川草 レトロウイルスの起源と進化 実験医学増刊「感染症いま何が起きているのか感染症 いま何が起きているのか 基礎研究、臨床から国際支援まで」, Vol.33 No.17 p. 117-126. 2015. Web
3. 坂口翔一、小出りえ、中川草、宮沢孝幸 猫モルビリウイルス研究の最前線 Felis, Vol.07 p.110-116. 2015. Web
2. 坂口翔一、中川草、小川誠、宮沢孝幸 尿細管間質性腎炎と関連するネコモルビリウイルス J-VET, '14/8月号 p. 74-79. 2014. Web
1. 鈴木泰博, 中川草, 長谷武志, 荻島創一, 田中博. (2005) 酵母タンパク質相互作用ネットワークの構造的特徴とその生物学的な特徴. 日本質量分析学会誌 53(3);137-141. Web PDF
4. 千葉啓和、中川草、谷口丈晃、藤渕航 (2008) "FPGAを用いた高速プライマー配列探索システムの開発" 情報処理学会研究報告, 2008(86), pp.1-4.
3. Ogishima S, Hase T, Nakagawa S, Suzuki Y and Tanaka H (2005) Molecular Evolutionary Analysis of Yeast Protein Interaction Network. World Academy of Science, Engineering and Technology 11 2005, p69-72.
2. Nakagawa S, Ogishima S, Hase T, Suzuki Y and Tanaka H (2004) The analysis between functions and densities in yeast intercomplex protein-protein interactions. The Fifteenth International conference on Genome Informatics, JSBi, 131-1, 2.
1. 中川草, 鈴木泰博, 長谷武志, 荻島創一, 田中博 (2004) 酵母のタンパク質相互作用の細胞内局在ごとの分析. 平成16年度数理モデル化と問題解決シンポジウム 情報処理学会，p.361-366.
20. 中川草 ウイルスは生命の一部であり移動する遺伝体 ネオウイルス学 河岡義裕編集、集英社、東京、p. 156 - 167. 2021. Web
19. 中川草 海外日本人研究者ネットワークUJAの紹介 JSBi News Letter, No. 38, p. 15, 2020 Web PDF
18. 中川草 ゲノム解析 応用物理学会 特別WEBコラム 新型コロナウィルス禍に学ぶ応用物理 Web PDF
17. 宮沢孝幸、中川草 レトロウイルス 獣医微生物学 第4版、p. 437 - 444, 2018. Web
16. 中川草 研究奨励賞受賞記「研究の歩みと今後の抱負」 日本進化学会ニュースvol.18 No.3, 日本進化学会、p. 25 - 28, 2017 Web PDF
15. 中川草、藤渕航 研究会・地域部会の活動報告「生命システム理論研究会」 JSBi News Letter, No. 31, p. 13, 2016 Web PDF
14. UJA（海外日本人研究者ネットワーク）編 カガクシャ・ネット編集協力 研究留学のすゝめ！ 羊土社, 2016. Web
13. UJA世話人一同 UJA: 世界の日本人研究者をつなぎ, 未来を拓くプラットフォーム. 細胞工学, Vol.32, No 9, 2013.
12. 中川草 浮動、生命情報学 『グローバル・コミュニケーション キーワードで読み解く生命・文化・社会』 伊藤陽一 、浅野智彦、赤堀三郎、浜日出夫、高田義久、粟谷佳司編集、ミネルヴァ書房、京都、2013. Web
11. いざよいの夕べ勉強会 研コミュ白書「いざよいの夕べ勉強会 三百年先の仲間へと紡ぐボストン発の熱きネットワーク」 細胞工学 Vol.32, No.7, p. 822 - 825, 2012.
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8. 田中博、中川草 タンパク質間相互作用ネットワークの構築原理 「数学者のための分子生物学入門」新しい数学を作ろう No.3 p.67-p.82
7. 中川草 バイオベンチャーキャピタル訪問： 株式会社バイオフロンティアパートナーズ バイオ企業訪問： サイファージェン・バイオシステムズ株式会社 ライフサイエンスレポート No.7 p.508 - 552
6. 中川草 最先端研究室訪問：国立がんセンター 疾病ゲノムセンター 水島研究室 バイオ企業訪問：オンコセラピーサイエンス (株) ライフサイエンスレポート No.6 p.435-450
5. 中川草 最先端研究室訪問１：東京医科歯科大学 疾患生命科学研究部 影近研究室 最先端研究室訪問2：東京医科歯科大学 医歯学総合研究科 山本研究室 バイオ企業訪問：株式会社ロコモジェン ライフサイエンスレポート No.5 p. 335-353
4. 中川草 最先端研究室訪問１：東京大学 大学院薬学系研究科 細胞情報教室 一條研究室 最先端研究室訪問２：東京医科歯科大学 大学院歯学総合研究科 インプラント・口腔再生医学 春日井研究室 バイオ企業訪問：株式会社ジャパン・ティッシュ・エンジニアリング ライフサイエンスレポート No.4 p. 274 - 291
3. 中川草 最先端研究室訪問1：東京医科歯科大学 生体材料工学研究所 秋吉研究室 最先端研究室訪問2：東京医科歯科大学 生体材料工学研究所 高谷研究室 バイオ企業訪問：浜松ホトニクス株式会社 ライフサイエンスレポート No.3 p.183 - 200
2. 中川草 最先端研究室訪問1：理化学研究所 宮脇研究室 最先端研究室訪問2：東京医科歯科大学 野田研究室 バイオ企業訪問：ヒュービット ジェノミックス 株式会社 ライフサイエンスレポート No.2 p.101 - 117
1. 中川草 最先端研究室訪問：東京医科歯科大学 水澤研究室 バイオ企業訪問：株式会社ジェノファンクション ライフサイエンスレポート No.1 p.44 - 53