Learn MRI
probably the best MRI learning material on the web.
lots of animations. A good supplement to The Basics of MRI.
MRI, CT, X-ray physics.
A free iOS APP for learning MRI.
a great video lecture given by Prof Paul Callaghan.
answers many basic questions in a clear Q&A format.
a nice collection of online and downloadable materials covering from MRI basics to advanced sequences.
MRI: from Picture to Proton (on Google book)
a good introductory book.
MRI: the basic (on Google book)
an easy book with lots of figures.
MRI from A to Z (on Google book)
a quick reference if you want to know the terms and acronyms in MRI.
MRI Physics, safety and neuroanatomy.
Learn about image artifact
Very detailed image QC manual with lots example of artifact by Dr Hansen at Center for Brain Science, Harvard
An Image-based Approach to Understanding the Physics of MR Artifacts: a great review paper
Learn fMRI
an introduction to Echo-Planar Imaging (EPI).
very good online lecture covering all aspects of fMRI.
"Why & How" Lecture series by MGH
very good lectures from neuroanatomy, physics to statistics
practiCal fMRI: the nuts & bolts
a nice blog explaining some tips and tricks
very good blog focuses on issues in layer-dependent fMRI imaging and analysis.
very useful tutorial on various tools and tips. Also has a nicely organized e-book: Andy's Brain Book.
good overview on why & how to process task & resting-state data
Course (video and slide) provided by FSL team.
Advanced Brain Imaging User Training Course by Dr. Chris Rorden
very good course on practical aspects in fMRI theory and analysis
Dr. Mark Cohen's course on Functional Neuroimaging
another comprehensive course on fMRI with more technical details.
highlight what need to take care of
Advanced Reference
Introduction to Resting State fMRI Functional Connectivity
Book from Oxford Press
Hands-on examples for single-subject, group and network analysis
Fundamentals of Brain Network Analysis
Learn DTI
very useful update on tips, tools and new findings on DTI.
very detail and useful guides
Learn Electrophysiology/Calcium recording
excellent teaching slides from UC Davis.
introduce how to use BlackRock hardware and software for electrophysiology recording.
In vivo calcium imaging: ultimate guide
Simple and pictorial introduction.
Learn Animal Behavior and Surgery
Spatial Navigation (Water Maze) Tasks, Chapter 13 of Methods of Behavior Analysis in Neuroscience.
Viral surgery and fiber implantation in deep brain nucleus in mouse
Learn Statistics
very good introduction on statistics and its concepts.
The Prism Guide to Interpreting Statistical Results
useful guide on what kind of test shall be used.
a collection of nice review in Nature on statistical methods and their problem.
a nice paper on why and when to show standard deviations or standard errors.
What and why use FDR for correcting multiple comparison explained by Prof Thomas Nichols. Matlab codes provided.
a good guide on how many significant figure to use when reporting numbers.
Learn Neuroscience
An excellent overview of the brain provided by the Society of Neuroscience. PDF version available.
Very good further introduction to neuroscience provided by McGill Univ.
A great book teaching neuronal activity (from single cell, population to network) and methods for modeling them.
Free courses provided by Harvard Univ.
Learn Matlab
2hr video for beginner provided by MathWorks.
A Guide to MATLAB, Cambridge press
Numerical Methods with MATLAB: Implementations and Applications
Excellent teaching slides by Gerald Recktenwald
a simple while comprehensive guide to Matlab programming by Prof Xenophontos
The best guide is the help of Matlab software.
Useful summary of errors and ways to debug.