Fall 2021 Group 1B

What do we want to know?

If we under/overexpress glial genes associated with Alzheimer's Disease will memory be restored?

We have identified 10 candidate genes expressed in glial cells that play a role in Alzheimer's disease. We want to under or overexpress these genes depending on their expression level to see if Drosophila with Alzheimer's memories can be restored. Using this simple model, we hope to gain a better understanding of the genetic makeup of Alzheimer's Disease in hopes of getting one step closer to a possible treatment. 


Methods

CODE

We utilized Python to extract our 10 candidate genes. We cross referenced thousands of genes and extracted Drosophila genes that are expressed in glia, are associated with Alzheimer's disease, and have human orthologs. (Click image to view code used to extract our gene list)

Y-Maze

We constructed several Y-mazes that were 3D printed. We had to make several adjustments with tape to ensure a snug fit. See below for the protocol used to odor balance the vials.

GAL4 Lines

We identified 10 candidate genes that area associated with Alzheimer's and are either overexpressed or under expressed. The first 6 are under expressed and the last 4 are overexpressed in glial cells. 

Protocol: Dilutions

Prior to training for the memory tests and before we ordered our stocks, we wanted to make sure two sweet odors were balanced (the flies showing no preference for either). However, we were unable to balance the odors in the Y-maze and will be switching to a T-maze in Spring 2022. The picture to the right depicts the first step in odor balancing, which was to dilute the concentrations of octan-3-ol and 4-methyl cyclohexanol

Protocol: Odor Balancing 


GAL4 Lines

We set up two crosses:

Results

We had issues balancing the two sweet odors in the Y-maze. It appeared the flies had a preference for one odor in one trial, but would prefer the other odor in the next trial. What we wanted to see was no preference for either odor so we could pair one of the odors with sucrose for our memory tests. 

Conclusions

We concluded that we need to switch things up for next semester. We gave the Y-maze a thorough effort, but realized we need to try something different. At first, we were dismayed; however, we realized that these things happen in laboratory experiments. It is very rare for an experimental protocol to work the first time. Even though the experiment did not work when balancing the odors, we gained ample experience in serial dilutions, transferring flies, using carbon dioxide to anesthetize the flies to count them and look for phenotypes, and observing all the genetic mutations (such as curly wings, stubbled bristles, and fewer bristles). 

Future Direction

Due to complications with the 3D printed Y maze and an inability to balance the odors, we are going to focus on working with a T-maze in the Spring 2022 semester. With a T-maze cut from plexiglass, we are hoping to balance the odors and train the flies and test our 10 candidate genes.