There are some small scripts that I coded for myself. I'm glad if these scripts can serve somebody else! But I do not take any responsibilities of the results from these. I also appreciate any reporting for fixing bugs.
conv_afreq2poptree2.pl
Poptree2 (Takezaki et al., 2010) is an excellent program for construction of population tree and calculation of genetic distances among populations. But this software needs input file of allele frequencies in its specific format. I coded the script to convert the allele frequency table from CONVERT (Glaubitz 2004) into the input format for Poptree2.
Poptree2 is now accept Genepop format and web version is also available at here.