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The Protégé Research Meetings cover diverse topics around knowledge representation and reasoning, ontologies, data integration, information extraction, information retrieval, and data quality. The meetings are held every other Friday at 12 (noon) to 1pm, in the Stanford Medical School Office Building (MSOB), Room X-275. To propose a talk please feel free to email Rafael Gonçalves (rafael.goncalves@stanford.edu).
Directions: MSOB and Parking locations
Email list: protege-research-meeting at lists.stanford.edu (follow the link to subscribe to the list)
Upcoming Meetings
Upcoming Meetings
Past Meetings
Past Meetings
2020
2019
- Translational research at the Center for Neurogenetics: Moving toward FAIR data. Vanessa Aguiar, Cornell University, NY
- How Scientific Knowledge Works – Modeling the Cycle of Scientific Investigation. Gully Burns, Chan Zuckerberg Initiative (CZI)
- How to Select a Multi-Criteria Decision Analysis Method? A Decision Support System based on an Ontology. Marco Cinelli, U.S. Environmental Protection Agency & Poznan University of Technology
- Things, not strings; a glimpse into Google's Knowledge Graph. Héctor Pérez-Urbina, Google
- A brief exposure to AllegroGraph. Csongor Nyulas and BioPortal team, BMIR, Stanford University
- Hans-Georg Fill, University of Fribourg, Switzerland and Saeedeh Shekarpour, University of Dayton, OH
- Information Extraction with Humans in the Loop. Anna Lisa Gentile - IBM Research
- Human-in-the-Loop Entity Resolution for Knowledge Curation. Lucian Popa and Kun Qian - IBM Research
- The Google datacommons initiative by Guha
2018
- Term Requests: Needs, Activities, Plans
- Implementation of RDA outputs into CEDAR for enhancing reproducibility, transparency, and discoverability of health data brokerage processes
- Data Integration for (Linked?) Open Data on the Web
- Report from US2TS
- Meta: A use case of biomedical ontologies in literature discovery
- Building an effective and efficient background knowledge resource to enhance ontology matching
- Ontology alignment with background knowledge by Amina Annane
- Utilizing Temporal Genomic Data for Healthcare
- Validating RDF data: ShEx and SHACL compared
2017
- MOD: A Metadata for Ontology Description and Publication
- Cool Semantic Web projects and Knowledge Graphs
- Practice talks WWW 2017
- A semantic resource for French drugs: development and use cases
- Investigating Editor Roles in a large-scale Study on WebProtégé Usage Logs
- ViewPointS: Maps where Social Ranking Meets the Semantic Web
- Report from WWW 2017
- Knowledge Graphs: Overview
- Report from ICBO 2017
2016
- Coupling Conceptual Models and Services Using Metamodeling
- Dataset Quality Ontology: An engineering experience
- Ontop: Answering SPARQL Queries over Relational Databases
- Report from the Pacific Symposium on Biocomputing
- Going fishing for ontology metadata
- Semantic Research Platform for Model Organism Data
- Discovery Informatics over the Biomedical Semantic Web: Automating Data and Knowledge Discovery for Drug Repurposing
- Extracting and Analyzing Sequential Interaction-Patterns in Ontology-Engineering Projects and BioPortal
- Eligibility Criteria Extraction, Representation & Use: An Informatics-Oriented Survey
- An ontology for Autism Spectrum Disorder (ASD) to infer ASD phenotypes from Autism Diagnostic Interview–Revised data,
- Report from Semantics 2016
- Report from ICBO
- An Open Repository Model for Acquiring Knowledge about Scientific Experiments
- Report from EKAW 2016
2015
- Ontology Reuse
- Pattern discovery in semantic data mining
- Bio2RDF
- Controlled Natural Language for User Interfaces on the Semantic Web
- Current advances to bridge the usability-expressivity gap in semantic search
- IO Informatics: Semantic Web in the wild: Lessons learned and future directions
- Methods and guidelines for the design and analysis of online citizen science
- A few contributions of the SIFR (Semantic Indexing of French biomedical Resources project) and how we reuse NCBO technology
- JSON-LD and Linked Data Platform
- Highlights from CHI 2015
- Creating Taxonomies and Ontologies to Organize the Learning Sciences
- The Polylingual Labeled Topic Model And Its Application To KOS Linking and Document Annotation
- Interactive debugging of ontologies
- MMI’s ORR: Practical Ontology Applications
- Report from KCAP and OWL-ED 2015
- Better metadata creation and management using CEDAR technology
2014
- Ontologies in Use
- Knowledge graphs
- Time and description logic
- Relation Extraction from Large-scale Corpus
- Relation Extraction and Knowledge-base Construction
- The BibFrame Initiative and Linked Data
- Network Science and Recommender Systems
- A Vision for Diagrammatic Ontology Engineering
- Linked Data tutorial
- Competency Question based Ontology Authoring
- Improving the NCBO Ontology Recommender
- Strategies for executing federated queries in SPARQL1.1
- Strategies and requirements for ontology development
- Report from ISWC 2014
- Linking Data on the Semantic Web
- An Engine for Rule-based Integration of Linked Data
2013
- Ontology gaming
- Hypermedia APIs
- Ontology diff
- Crowdsourcing systems
- Report from Web Science 2013
- Object mappers for RDF data
- Wikipedia - quality and editing behavior
- Recent papers from the Protege and NCBO groups
- Recent papers from the NCBO group (Shah lab)
- Ranking search results
- noSQL conference
- ISWC 2013 highlights
- RDF Indexing
- Ontology recommendation
- Biomedical information retrieval
- Concept maps for early ontology development
2012
- Human-computer interaction and the semantic web
- User interaction and usability
- OWL 2 RL Profile
- Ontology evaluation
- Crowdsourcing
- Semantic search
- OntoClean
- Recommender Systems - More of an HCI Perspective
- Mapping structured sources to ontologies
- Ontology learning
- NoSQL
- Ontology mapping and knowledge translation
- Collaboration
- Report from ISWC 2012
- Crowdsourcing, too
- OWL Integrity Constraints
2011
- Ontology evolution
- Ontology design patterns
- Modularization and biomedical ontologies (papers from ISWC)
- RDF and SPARQL (papers from ISWC)
- Ontology Realism
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