投稿日: 2018/10/16 6:46:31
１０月２６日 セミナーのお知らせ "Dr. Jason Swedlow on Oct 26 at Kyoto University"
日時：2018/10/26（金）17時00分〜18時00分
会場：学術情報メディアセンター南館 2階 201マルチメディア講義室
http://www.kyoto-u.ac.jp/ja/access/campus/yoshida/map6r_ys.html
（上記URLのマップ中、93番の建物です）
※お身体の不自由な方はエレベーターをご利用いただけますので、事務室にお申し付けください。
プログラム：
◆17時00分～18時00分 【使用言語：英語、同時通訳なし】
講演者： Jason Swedlow （Center for Gene Regulation & Expression, University of Dundee, UK・Professor）
講演題目: OME’s Bio-Formats, OMERO, & IDR: Open Tools for Accessing, Integrating, Mining and Publishing Image Data @ Scale
講演概要： Despite significant advances in biological imaging and analysis, major informatics challenges remain unsolved: file formats are proprietary, storage and analysis facilities are lacking, as are standards for sharing image data and results. The Open Microscopy Environment (OME) is an open-source software framework developed to address these challenges. OME releases specifications and software for managing image datasets and integrating them with other scientific data. OME’s Bio-Formats is a file translator that enables scientists to open and work with imaging data in the software application of their choice. OMERO is an image database application that provides data management and sharing capabilities to imaging scientists. Bio-Formats and OMERO are used in 1000’s of labs worldwide to enable discovery with imaging.
Recently, we have used Bio-Formats and OMERO to build a system for publishing imaging data associated with peer-reviewed publications. This system, the Image Data Resource (IDR) includes image data linked to independent studies from genetic, RNAi, chemical, localisation and geographic high content screens, super-resolution microscopy, and digital pathology. Datasets range from several GBs to tens of TBs. We have also built cloud-based analysis tools portals to catalyse the re-use and re-analysis of published imaging data.
This talk will review our work on these open source image data solutions and present our vision for future image data resources.
お問い合わせ：京都大学 学術情報メディアセンター 石野 隼伍
電話番号：075-753-7428
メール：ishino.shungo.6c * kyoto-u.ac.jp （*を＠に変えてください）
http://www.media.kyoto-u.ac.jp/accms_web/event/1521.html （日本語）
http://www.media.kyoto-u.ac.jp/accms_web/en/event_en/1525.html （英語）