Kalyan M.Sc Thesis

The following MATLAB programs were used as a part of MSc.(Engg.) thesis submitted.

Thesis Title: Development and Validation of Analytical Models for Diffuse Fluorescence Spectroscopy/Imaging in Regular Geometries.

Kalyan MSc Thesis

Matlab Based Programs (Requires NIRFAST):

1. Source file for Circular Geometry.

   1. 1. • GetPhase.m

         • avg_out_values_circle.m

         • fem_amp_phase_Circle.m

         • load_fem_data_Circle.m

         • src_det_dist_Circle.m

         • analytical_MTOF_Circle.m

         • analytical_data_Circle.m

         • fdot_Circle.m

• 1. Source file for Cube Geometry.

     1. • avg_out_values.m

        • load_fem_data_Cube.m

        • fem_amp_phase_Cube.m

        • analytical_data_Cube.m

        • src_det_dist_Cube.m

        • fdot_Cube.m

2. Source file for Semi-Infinite Geometry approximation using Slab.

   1. 1. • fem_amp_phase_Slab.m

         • avg_out_values.m

         • load_fem_data_Slab.m

         • analytical_data_Slab.m

         • src_det_dist_Slab.m

         • fdot_Slab.m

         • analytical_MTOF_Slab.m

3. Source file for Cylindrical Geometry.

   1. 1. • fem_amp_phase_Cylinder.m

         • avg_out_values_Cylinder.m

         • load_fem_data_Cylinder.m

         • src_det_dist_Cylinder.m

         • fdot_Cylinder.m

         • analytical_data_Cylinder.m

• 1. Source file for Spherical Geometry.

     1. 1. • src_det_dist_Sphere.m

           • fem_amp_phase_Sphere.m

           • avg_out_values_Sphere.m

           • load_fem_data_Sphere.m

           • analytical_MTOF_Sphere.m

           • fdot_Sphere.m

           • analytical_data_Sphere.m

  2. Source file for MTOF calculation.

• • • • save_trdata.m

      • load_trdata.m

      • TR_data.m

      • TPSF.m

      • plot_mtof.m

      • fem_MeanTimeOfFlight.m

      • Tau_Vary.m

      • AllGeom_MTOF.m

4. Source file for Patient Mesh.

   1. 1. • fem_amp_phase_pat.m

         • avg_out_values.m

         • load_fem_data_pat.m

         • analytical_data_pat.m

         • uniform_fl_mesh.m

         • convert_fl_mesh.m

         • fdot_pat.m

5. Files performing generic functions.

   1. 1. • • run_simulations.m

           • TOF_plots.m

           • params.m

           • setup.m

           • meshes.m

           • Flux_plots.m

           • MTOF_plots.m

           • get_brs_rad.m

           • Cube_PAT.m

6. Meshes to verify the fluorescence computation in NIRFAST.

• 1. Directory Structure for source o be integrated in NIRFAST.