Kalyan M.Sc Thesis
The following MATLAB programs were used as a part of MSc.(Engg.) thesis submitted.
Thesis Title: Development and Validation of Analytical Models for Diffuse Fluorescence Spectroscopy/Imaging in Regular Geometries.
Kalyan MSc Thesis
Matlab Based Programs (Requires NIRFAST):
Source file for Circular Geometry.
GetPhase.m
avg_out_values_circle.m
fem_amp_phase_Circle.m
load_fem_data_Circle.m
src_det_dist_Circle.m
analytical_MTOF_Circle.m
analytical_data_Circle.m
fdot_Circle.m
Source file for Cube Geometry.
avg_out_values.m
load_fem_data_Cube.m
fem_amp_phase_Cube.m
analytical_data_Cube.m
src_det_dist_Cube.m
fdot_Cube.m
Source file for Semi-Infinite Geometry approximation using Slab.
fem_amp_phase_Slab.m
avg_out_values.m
load_fem_data_Slab.m
analytical_data_Slab.m
src_det_dist_Slab.m
fdot_Slab.m
analytical_MTOF_Slab.m
Source file for Cylindrical Geometry.
fem_amp_phase_Cylinder.m
avg_out_values_Cylinder.m
load_fem_data_Cylinder.m
src_det_dist_Cylinder.m
fdot_Cylinder.m
analytical_data_Cylinder.m
Source file for Spherical Geometry.
src_det_dist_Sphere.m
fem_amp_phase_Sphere.m
avg_out_values_Sphere.m
load_fem_data_Sphere.m
analytical_MTOF_Sphere.m
fdot_Sphere.m
analytical_data_Sphere.m
Source file for MTOF calculation.
save_trdata.m
load_trdata.m
TR_data.m
TPSF.m
plot_mtof.m
fem_MeanTimeOfFlight.m
Tau_Vary.m
AllGeom_MTOF.m
Source file for Patient Mesh.
fem_amp_phase_pat.m
avg_out_values.m
load_fem_data_pat.m
analytical_data_pat.m
uniform_fl_mesh.m
convert_fl_mesh.m
fdot_pat.m
Files performing generic functions.
run_simulations.m
TOF_plots.m
params.m
setup.m
meshes.m
Flux_plots.m
MTOF_plots.m
get_brs_rad.m
Cube_PAT.m
Meshes to verify the fluorescence computation in NIRFAST.
Directory Structure for source o be integrated in NIRFAST.