Kalyan M.Sc Thesis

The following MATLAB programs were used as a part of MSc.(Engg.) thesis submitted.

Thesis Title: Development and Validation of Analytical Models for Diffuse Fluorescence Spectroscopy/Imaging in Regular Geometries.

Kalyan MSc Thesis

Matlab Based Programs (Requires NIRFAST):

  1. Source file for Circular Geometry.

        • GetPhase.m

        • avg_out_values_circle.m

        • fem_amp_phase_Circle.m

        • load_fem_data_Circle.m

        • src_det_dist_Circle.m

        • analytical_MTOF_Circle.m

        • analytical_data_Circle.m

        • fdot_Circle.m

    1. Source file for Cube Geometry.

        • avg_out_values.m

        • load_fem_data_Cube.m

        • fem_amp_phase_Cube.m

        • analytical_data_Cube.m

        • src_det_dist_Cube.m

        • fdot_Cube.m

  1. Source file for Semi-Infinite Geometry approximation using Slab.

        • fem_amp_phase_Slab.m

        • avg_out_values.m

        • load_fem_data_Slab.m

        • analytical_data_Slab.m

        • src_det_dist_Slab.m

        • fdot_Slab.m

        • analytical_MTOF_Slab.m

  2. Source file for Cylindrical Geometry.

        • fem_amp_phase_Cylinder.m

        • avg_out_values_Cylinder.m

        • load_fem_data_Cylinder.m

        • src_det_dist_Cylinder.m

        • fdot_Cylinder.m

        • analytical_data_Cylinder.m

    1. Source file for Spherical Geometry.

          • src_det_dist_Sphere.m

          • fem_amp_phase_Sphere.m

          • avg_out_values_Sphere.m

          • load_fem_data_Sphere.m

          • analytical_MTOF_Sphere.m

          • fdot_Sphere.m

          • analytical_data_Sphere.m

    2. Source file for MTOF calculation.

        • save_trdata.m

        • load_trdata.m

        • TR_data.m

        • TPSF.m

        • plot_mtof.m

        • fem_MeanTimeOfFlight.m

        • Tau_Vary.m

        • AllGeom_MTOF.m

  1. Source file for Patient Mesh.

        • fem_amp_phase_pat.m

        • avg_out_values.m

        • load_fem_data_pat.m

        • analytical_data_pat.m

        • uniform_fl_mesh.m

        • convert_fl_mesh.m

        • fdot_pat.m

  2. Files performing generic functions.

          • run_simulations.m

          • TOF_plots.m

          • params.m

          • setup.m

          • meshes.m

          • Flux_plots.m

          • MTOF_plots.m

          • get_brs_rad.m

          • Cube_PAT.m

  3. Meshes to verify the fluorescence computation in NIRFAST.

    1. Directory Structure for source o be integrated in NIRFAST.