In the 3D spectrum diagonal (at H and H diagonal) and cross peaks are expected. Only cross-peaks confer spatial information.
The 3D 13C NOESY-HSQC experiment is specifically designed to obtain carbon-edited NOESY spectra of carbon-labeled biomolecules and protein-ligand complexes from which homonuclear 1H-1H NOEs can be clearly assigned even in overcrowded regions (the mechanism involves 1H-1H NOE step followed by a heteronuclear transfer via 1JCH).
To start with, magnetization is exchanged between all hydrogens using the NOE. The NOESY experiment yields a 2D proton-proton correlation map with two different types of signals: a.) autocorrelation diagonal peaks, and b.) off-diagonal cross-peaks correlating spins close to each other. NOESY spectra are represented in phase-sensitive mode in order to distinguish exchange cross-peaks and unwanted anti-phase COSY contributions.
After NOESY the magnetization is transferred to neighboring 13C nuclei and back to 1H for detection. This acquires the chemical shift of the carbon attached to the corresponding hydrogen, which shifts the NOESY cross-peak into the carbon plane. Peaks that were previously too close to be resolved in the NOESY spectrum become discrete. Transfer either occurs to/from the aliphatic 13C nuclei or to/from the aromatic 13C nuclei (but not both) depending on the 13C frequency used during the pulse sequence.
Each strip in the CH plane contains NOE’s from one CH group to all other hydrogens nearby. This experiment yields constraints that can be used to calculate the 3D protein structure after carbon assignation has been done using other NMR methods.
Figure 1: Original PDF paper pulse sequence with accompanying explanation
Figure 2: Bruker pulse sequence to record 3D 13C NOESY-HSQC experiments with with sensitivity-improved building block (PEP)