Holliday Junction
You receive 3 different junctions, with different DNA sequences. From the measured dwell times, you should be able to determine which junction is which.
Junction 1 XR (Dtup= 0.290 s, Dtdown= 0.255 s )
J1Lb : CCC TAG CAA GCC GCT GCT ACG G
Biot-J1Th :/5Biosg/CCG TAG CAG CGA GAG CGG TGG G
Cy5-J1Tr : /5Cy5/CCC ACC GCT CTT CTC AAC TGG G
Cy3-J1x : /5Cy3/CCC AGT TGA GAG CTT GCT AGG G
Junction 1 XB (Dtup= 0.138 s, Dtdown= 0.306 s )
Cy5 -J1b : /5Cy5/CCC TAG CAA GCC GCT GCT ACG G
J1h : CCG TAG CAG CGA GAG CGG TGG G
Biot-J1r : /5Biosg/CCC ACC GCT CTT CTC AAC TGG G
Cy3-J1x : /5Cy3/CCC AGT TGA GAG CTT GCT AGG G
Junction 7 (Dtup= 0.333 s, Dtdown= 0.223 s )
Cy5-J7b : /5Cy5/CC CTA GCA AGC CGC TGC TAC GG
Cy3-J7h : /5Cy3/CC GTA GCA GCG CGA GCG GTG GG
Biot-J7r : /5BiosG/CC CAC CGC TCG GCT CAA CTG GG
J7x : CCC AGT TGA GCG CTT GCT AGG G