3 Profile

所属・連絡先 

井鷺 裕司 （いさぎ ゆうじ） Yuji ISAGI

京都大学大学院農学研究科 森林科学専攻 森林生物学研究室

〒606-8502 京都市左京区北白川追分町

e-mail: isagi.yuji.5n(アットマーク)kyoto-u.ac.jp

授業科目 

Recent Papers 

■□■□■□2020□■□■□■

S Yonezawa, M Ushio, H Yamanaka, M Miya, A Takayanagi, Y Isagi, Environmental DNA metabarcoding reveals the presence of a small, quick-moving, nocturnal water shrew in a forest streamConservation Genetics 21 (6), 1079-1084

S Zhu, J Chen, J Zhao, HP Comes, P Li, C Fu, X Xie, R Lu, W Xu, Y Feng, ...,Genomic insights on the contribution of balancing selection and local adaptation to the long‐term survival of a widespread living fossil tree, Cercidiphyllum japonicum. New Phytologist 228 (5), 1674-1689

H Ando, H Mukai, T Komura, T Dewi, M Ando, Y Isagi, Methodological trends and perspectives of animal dietary studies by noninvasive fecal DNA metabarcoding. Environmental DNA 2 (4), 391-406

A Takano, S Sakaguchi, P Li, A Matsuo, Y Suyama, GH Xia, X Liu, Y Isagi, A Narrow Endemic or a Species Showing Disjunct Distribution? Studies on Meehania montis-koyae Ohwi (Lamiaceae). Plants 9 (9), 1159

S Sakaguchi, K Nagasawa, Y Umetsu, J Nagasawa, S Ichikawa, ..., Phylogenetic origin of Magnolia pseudokobus (Magnoliaceae), a rare Magnolia extinct in the wild, revealed by chloroplast genome sequencing, genome-wide … Journal of Forest Research 25 (5), 322-328 2 2020

S Ando, Y Isagi, K Kitayama, Genecology and ecophysiology of the maintenance of foliar phenotypic polymorphisms of Leptospermum recurvum (Myrtaceae) under oscillating atmospheric … Ecological Research 35 (5), 792-806

K Nagasawa, H Setoguchi, M Maki, H Goto, K Fukushima, Y Isagi, ..., Genetic consequences of plant edaphic specialization to solfatara fields: Phylogenetic and population genetic analysis of Carex angustisquama (Cyperaceae). Molecular ecology 29 (17), 3234-3247

S Yonezawa, T Nakano, N Nakahama, K Tomikawa, Y Isagi, Environmental DNA reveals cryptic diversity within the subterranean amphipod genus Pseudocrangonyx Akatsuka & Komai, 1922 (Amphipoda: Crangonyctoidea …The Journal of Crustacean Biology 40 (4), 479-483

Y Isagi, T Makino, T Hamabata, PL Cao, S Narita, Y Komaki, K Kurita, ...Significant loss of genetic diversity and accumulation of deleterious genetic variation in a critically endangered azalea species, Rhododendron boninense, growing … Plant Species Biology 35 (3), 166-174

M Kato, N Nakahama, A Izuno, N Hirai, S Ueda, Y Isagi, Development of microsatellite markers for an extremely limited distributed rare diving beetle species, Acilius kishii, and a widely distributed species, Acilius japonicus …Entomological Science 23 (2), 204-207

D Takahashi, Y Feng, S Sakaguchi, Y Isagi, Y Qiu, P Li, R Lu, C Lu, ..., Geographic and subsequent biotic isolations led to a diversity anomaly ofHeterotropa (Aristolochiaceae) in insular versus continental regions of the Sino-Japanese Floristic Region

T Sakagami, S Sakaguchi, Y Isagi, H Setoguchi, Development and characterization of nuclear microsatellite markers in Aphananthe aspera (Thunb.) Planch. (Cannabaceae) Journal of Forest Research 25 (2), 120-123

Y Tsunamoto, S Naoe, T Masaki, Y Isagi, Different contributions of birds and mammals to seed dispersal of a fleshy-fruited tree. Basic and Applied Ecology 43, 66-75 13 2020

■□■□■□2019□■□■□■

Jun J. Sato, Daisuke Kyogoku, Taketo Komura, Chiaki Inamori, Kouhei Maeda, Yasunori Yamaguchi, Yuji Isagi: Potential and Pitfalls of the DNA Metabarcoding Analyses for the Dietary Study of the Large Japanese Wood Mouse Apodemus speciosus on Seto Inland Sea Islands. Mammal Study 08/2019; 44(4):1., DOI:10.3106/ms2018-0067

Yoshihiro Tsunamoto, Shoji Naoe, Takashi Masaki, Yuji Isagi: Different contributions of birds and mammals to seed dispersal of a fleshy-fruited tree. Basic and Applied Ecology 08/2019;, DOI:10.1016/j.baae.2019.07.005

Naoyuki Nakahama, Kenji Suetsugu, Azusa Ito, Masayuki Hino, Tomohisa Yukawa, Yuji Isagi: Natural hybridization patterns between widespread Calanthe discolor (Orchidaceae) and insular Calanthe izu-insularis on the oceanic Izu Islands.. Botanical Journal of the Linnean Society 07/2019; 190(4):436-449., DOI:10.1093/botlinnean/boz025

Koki R. Katsuhara, Naoyuki Nakahama, Taketo Komura, Masaya Kato, Yuko Miyazaki, Yuji Isagi, Motomi Ito, Atushi Ushimaru: Development of microsatellite markers for the annual andromonoecious herb Commelina communis f. ciliata (Commelinaceae). Genes & Genetic Systems 06/2019; 94(3)., DOI:10.1266/ggs.18-00058

Duy Long Pham, Yasuto Ito, Ryuichi Okada, Hidetoshi Ikeno, Yuji Isagi, Michimasa Yamasaki: Effects of leaf conditions and flight activity on the behaviour of Platypus quercivorus (Murayama) (Coleoptera: Platypodidae). Journal of Applied Entomology 06/2019;, DOI:10.1111/jen.12671

Tomoko Hamabata, Gohta Kinoshita, Kazuki Kurita, Ping-Lin Cao, Motomi Ito, Jin Murata, Yoshiteru Komaki, Yuji Isagi, Takashi Makino: Endangered island endemic plants have vulnerable genomes. Communications Biology 06/2019; 2(1):244., DOI:10.1038/s42003-019-0490-7

Yuichi Yamaura, Ayu Narita, Yoshinobu Kusumoto, Atsushi J Nagano, Ayumi Tezuka, Toru Okamoto, Hikaru Takahara, Futoshi Nakamura, Yuji Isagi, David Lindenmayer: Genomic reconstruction of 100 000-year grassland history in a forested country: population dynamics of specialist forbs. Biology letters 05/2019; 15(5):20180577., DOI:10.1098/rsbl.2018.0577

Kazuki Kurita, Daisuke Kyogoku, Atsushi Abe, Masatsugu Yokota, Yuji Isagi: Development of microsatellite markers for an endangered fern in the Ryukyus, Plagiogyria koidzumii (Plagiogyriaceae). Genes & Genetic Systems 04/2019; 94(2)., DOI:10.1266/ggs.18-00056

Keiju Kishikawa, Kenji Suetsugu, Daisuke Kyogoku, Kenji Ogaki, Daisuke Iga, Kohtaroh Shutoh, Yuji Isagi, Shingo Kaneko: Development of microsatellite markers for the completely cleistogamous species Gastrodia takeshimensis (Orchidaceae) that are transferable to its chasmogamous sister G. nipponica. Genes & Genetic Systems 04/2019; 94(2)., DOI:10.1266/ggs.18-00057

Leiko Mizusawa, Naoko Ishikawa, Okihito Yano, Shinji Fujii, Yuji Isagi: Geographic Distribution of Ploidy Levels and Chloroplast Haplotypes in Japanese Clerodendrum trichotomum s. lat. (Lamiaceae). Acta Phytotaxonomica et Geobotanica DOI:10.18942/apg.201823

Yayan Wahyu C. Kusuma, Siti R. Ariati, Rosniati A. Risna, Chika Mitsuyuki, Yoshihisa Suyama, Yuji Isagi: Seedling Selection Using Molecular Approach for Ex Situ Conservation of Critically Endangered Tree Species ( Vatica bantamensis (Hassk.) Benth. & Hook. ex Miq.) in Java, Indonesia. Tropical Conservation Science 01/2019; 12(1480):194008291984950., DOI:10.1177/1940082919849506

■□■□■□2018□■□■□■

Kurumi Arima, Daisuke Kyogoku, Naoyuki Nakahama, Kenji Suetsugu, Masato Ohtani, Chiyo Ishii, Hiroshi Terauchi, Yumiko Terauchi, Yuji Isagi: Mating pattern of a distylous primrose in a natural population: unilateral outcrossing and asymmetric selfing between sexual morphs. Evolutionary Ecology 11/2018;, DOI:10.1007/s10682-018-9965-0

Michael D Crisp, Lyn G. Cook, David M. J. S. Bowman, Meredith Cosgrove, Yuji Isagi, Shota Sakaguchi: Turnover of southern cypresses in the post-Gondwanan world: extinction, transoceanic dispersal, adaptation and rediversification. New Phytologist 10/2018; 221(15A)., DOI:10.1111/nph.15561

Koki Nagasawa, Hiroaki Setoguchi, Masayuki Maki, Hayato Goto, Keitaro Fukushima, Yuji Isagi, Shota Sakaguchi: Development and characterization of EST‐SSR markers for Carex angustisquama (Cyperaceae), an extremophyte in solfatara fields. APPLICATIONS IN PLANT SCIENCES 10/2018; 6(10)., DOI:10.1002/aps3.1185

Suzuki Setsuko, Kyoko Sugai, Kentaro Uchiyama, Saeko Katoh, Hidetoshi Kato, Satoshi Narita, Yuji Isagi: Development of microsatellite markers for Callicarpa subpubescens (Lamiaceae), an endemic species of the Bonin Islands. Journal of Forest Research 09/2018;, DOI:10.1080/13416979.2018.1520624

Daiki Takahashi, Shota Sakaguchi, Yuji Isagi, Hiroaki Setoguchi: Comparative chloroplast genomics of series Sakawanum in genus Asarum (Aristolochiaceae) to develop single nucleotide polymorphisms (SNPs) and simple sequence repeat (SSR) markers. Journal of Forest Research 09/2018;, DOI:10.1080/13416979.2018.1518649

Yuichi Tsuda, Naoyuki Nakahama, Hidetoshi Kato, Yuji Isagi: The effects of pollination disturbance on the endemic plant species Leptopetalum grayi (Rubiaceae) in the Ogasawara Islands, Japan. Japanese Journal of Conservation Ecology 07/2018; 23:127-136., DOI:10.18960/hozen.23.1_127

Jun J. Sato, Takuya Shimada, Daisuke Kyogoku, Taketo Komura, Shigeru Uemura, Takashi Saitoh, Yuji Isagi: Dietary niche partitioning between sympatric wood mouse species (Muridae: Apodemus) revealed by DNA meta-barcoding analysis. Journal of Mammalogy 06/2018; 99(4)., DOI:10.1093/jmammal/gyy063

Kana Magota, Shota Sakaguchi, Kensei Akai, Yuji Isagi, Yoshinori Murai, Hiroaki Setoguchi: Genetic Diversity of Saxifraga acerifolia and S. fortunei Based on Nuclear and Chloroplast Microsatellite Markers. 

Taketo Komura, Haruko Ando, Kazuo Horikoshi, Hajime Suzuki, Yuji Isagi: DNA barcoding reveals seasonal shifts in diet and consumption of deep-sea fishes in wedge-tailed shearwaters. PLoS ONE 04/2018; 13(4):e0195385., DOI:10.1371/journal.pone.0195385

Naoyuki Nakahama, Kei Uchida, Atushi Ushimaru, Yuji Isagi: Historical changes in grassland area determined the demography of semi-natural grassland butterflies in Japan. Heredity 02/2018; 121(2)., DOI:10.1038/s41437-018-0057-2

Naoyuki Nakahama, Azusa Ito, Shingo Kaneko, Yu Matsuki, Yoshihisa Suyama, Azusa Hayano, Miho Murayama, Yuji Isagi: Development of microsatellite markers for the endangered orchid Calanthe izu-insularis (Orchidaceae). Genes & Genetic Systems 01/2018; 93(1)., DOI:10.1266/ggs.17-00021

Yayan Wahyu C. Kusuma, Ona Noerwana, Yuji Isagi: New Evidence for Flower Predation on Three Parasitic Rafflesia Species From Java. Tropical Conservation Science 01/2018; 11(2):194008291879601., DOI:10.1177/1940082918796011

■□■□■□2017□■□■□■

Naoyuki Nakahama, Yuji Isagi: Recent transitions in genetic diversity and structure in the endangered semi‐natural grassland butterfly, Melitaea protomedia, in Japan. Insect Conservation and Diversity 12/2017;, DOI:10.1111/icad.12280

Shota Sakaguchi, Kenji Horie, Takuma Kimura, Atsushi J. Nagano, Yuji Isagi, Motomi Ito: Phylogeographic testing of alternative histories of single-origin versus parallel evolution of early flowering serpentine populations of Picris hieracioides L. (Asteraceae) in Japan. Ecological Research 11/2017;, DOI:10.1007/s11284-017-1536-2

Shota Sakaguchi, Daiki Takahashi, Setoguchi Hiroaki, Isagi Yuji: Genetic structure of the clonal herb Tanakaea radicans (Saxifragaceae) at multiple spatial scales, revealed by nuclear and mitochondrial microsatellite markers. Plant Species Biology 11/2017; 33(11)., DOI:10.1111/1442-1984.12196

Takehito Nakazawa, Ayako Izuno, Masato Horii, Rina Kodera, Hiroshi Nishimura, Yuichiro Hirayama, Yuta Tsunematsu, Yasumasa Miyazaki, Tatsuya Awano, Hajime Muraguchi, Kenji Watanabe, Masahiro Sakamoto, Keiji Takabe, Takashi Watanabe, Yuji Isagi, Yoichi Honda: Effects of pex1 disruption on wood lignin biodegradation, fruiting development and the utilization of carbon sources in the white-rot Agaricomycete Pleurotus ostreatus and non-wood decaying Coprinopsis cinerea. Fungal Genetics and Biology 10/2017; 109., DOI:10.1016/j.fgb.2017.10.002

Kanako Sugahara, Yuko Kaneko, Shota Sakaguchi, Satoshi Ito, Keisuke Yamanaka, Hitoshi Sakio, Kazuhiko Hoshizaki, Wajirou Suzuki, Norikazu Yamanaka, Yuji Isagi, Arata Momohara, Hiroaki Setoguchi: Quaternary range-shift history of Japanese wingnut ( Pterocarya rhoifolia ) in the Japanese Archipelago evidenced from chloroplast DNA and ecological niche modeling. Journal of Forest Research 07/2017;, DOI:10.1080/13416979.2017.1351837

Duy Long Pham, Yasuto Ito, Ryuichi Okada, Hidetoshi Ikeno, Yuji Isagi, Michimasa Yamasaki: Phototactic behavior of the ambrosia beetle Platypus quercivorus (Murayama) (Coleoptera: Platypodidae) before and after flight. Journal of Insect Behavior 05/2017; 30(3):1-13., DOI:10.1007/s10905-017-9615-3

Shota Sakaguchi, Saneyoshi Ueno, Yoshihiko Tsumura, Hiroaki Setoguchi, Motomi Ito, Chie Hattori, Shogo Nozoe, Daiki Takahashi, Riku Nakamasu, Taishi Sakagami, Guillaume Lannuzel, Bruno Fogliani, Adrien S. Wulff, Laurent L'Huillier, Yuji Isagi: Application of a Simplified Method of Chloroplast Enrichment to Small Amounts of Tissue for Chloroplast Genome Sequencing. APPLICATIONS IN PLANT SCIENCES 05/2017; 5(5-5):1700002., DOI:10.3732/apps.1700002

Tetsuro Yoshikawa, Shota Harasawa, Yuji Isagi, Natsumi Niikura, Shinsuke Koike, Hisatomo Taki, Shoji Naoe, Takashi Masaki: Relative importance of landscape features, stand structural attributes, and fruit availability on fruit-eating birds in Japanese forests fragmented by coniferous plantations. Biological Conservation 05/2017; 209:356-365., DOI:10.1016/j.biocon.2017.02.040

Haruko Ando, Tetsuro Sasaki, Kazuo Horikoshi, Hajime Suzuki, Hayato Chiba, Michimasa Yamasaki, Yuji Isagi: Wide-ranging Movement and Foraging Strategy of the Critically Endangered Red-headed Wood Pigeon ( Columba janthina nitens ): Findings from a Remote Uninhabited Island. Pacific Science 04/2017; 71(2):161-170., DOI:10.2984/71.2.5

Hyeok-Jae Choi, Takuya Ito, Masashi Yokogawa, Shingo Kaneko, Yoshihisa Suyama, Yuji Isagi: Population and genetic status of a critically endangered species in Korea: Hydrangea luteovenosa (Hydrangeaceae). 03/2017; 47(1):1-5., DOI:10.11110/kjpt.2017.47.1.1

Kenji Suetsugu, Naoyuki Nakahama, Azusa Ito, Yuji Isagi: Time-lapse photography reveals the occurrence of unexpected bee-pollination in Calanthe izuinsularis , an endangered orchid endemic to the Izu archipelago. Journal of Natural History 03/2017; 51(13):1-10., DOI:10.1080/00222933.2017.1293745

Kohtaroh Shutoh, Ayako Izuno, Yuji Isagi, Takahide Kurosawa, Shingo Kaneko: Development of microsatellite markers for partially and putative fully mycoheterotrophic varieties of Pyrola japonica sensu lato (Ericaceae). Genes & Genetic Systems 02/2017; 92(2)., DOI:10.1266/ggs.16-00048

Ayako Izuno, Kanehiro Kitayama, Yusuke Onoda, Yuki Tsujii, Masaomi Hatakeyama, Atsushi J Nagano, Mie N Honjo, Rie Shimizu-Inatsugi, Hiroshi Kudoh, Kentaro K Shimizu, Yuji Isagi: The population genomic signature of environmental association and gene flow in an ecologically divergent tree species Metrosideros polymorpha (Myrtaceae). Molecular Ecology 01/2017; 26(6)., DOI:10.1111/mec.14016

■□■□■□2016□■□■□■

Toshiaki Kondo, Sonoko Watanabe, Takashi Shiga, Yuji Isagi: Microsatellite Markers for Nuphar Japonica (Nymphaeaceae), An Aquatic Plant in the Agricultural Ecosystem of Japan. APPLICATIONS IN PLANT SCIENCES 12/2016; 4(12):1600082., DOI:10.3732/apps.1600082

Takashi Shiga, Masashi Yokogawa, Shingo Kaneko, Yuji Isagi: Genetic diversity and population structure of Nuphar submersa (Nymphaeaceae), a critically endangered aquatic plant endemic to Japan, and implications for its conservation. Journal of Plant Research 11/2016; 130(1)., DOI:10.1007/s10265-016-0869-1

Takehito Nakazawa, Ayako Izuno, Rina Kodera, Yasumasa Miyazaki, Masahiro Sakamoto, Yuji Isagi, Yoichi Honda: Identification of two mutations that cause defects in the ligninolytic system through an efficient forward genetics in the white-rot agaricomycete Pleurotus ostreatus. Environmental Microbiology 11/2016; 19(1)., DOI:10.1111/1462-2920.13595

Shingo Kaneko, Yu Matsuki, Ying-Xiong Qiu, Yuji Isagi: Chloroplast DNA sequencing and detailed microsatellite genotyping of all remnant populations suggests that only a single genet survives of the critically endangered plant Rehmannia japonica. Journal of Plant Research 11/2016; 130(1)., DOI:10.1007/s10265-016-0873-5

Ayako Izuno, Mamoru Kanzaki, Taksin Artchawakom, Chongrak Wachrinrat, Yuji Isagi: Vertical Structure of Phyllosphere Fungal Communities in a Tropical Forest in Thailand Uncovered by High-Throughput Sequencing. PLoS ONE 11/2016; 11(11):e0166669., DOI:10.1371/journal.pone.0166669

Alejandra Paola Ojeda, Alexandre Wagner Silva Hilsdorf, Ana Caroline Leite, Ao-ao Yang, Ayako Izuno, Chongbo He, Chun-ya Zhou, Daisuke Kyogoku, Danilo Caneppele, Dongmei Zhu, Fernando Stopato da Fonseca, Hao Yin, Hidetoshi Kato, Jackeline Alves Vilar, Jiale Li, Jianqing Peng, Kurumi Arima, Ling Zhu, L. V. Yefeng, Meilin Tian, Mingyu Di, Naoyuki Nakahama, Shilei Li, Weimin Wang, Wen Song, Weidong Liu, Xiaojun Liu, Xuekai Han, Ying Pan, Yong-quan Su, Yuichi Tsuda, Yuji Isagi, Yunfeng Li, Zhi-meng Zhuang, Zhiyi Bai, Zunchun Zhou: Microsatellite records for volume 8, issue 4. Conservation Genetics Resources 10/2016;, DOI:10.1007/s12686-016-0635-7

Toshiaki Kondo, Sen Nishimura, Naoki Tani, Kevin Kit Siong Ng, Soon Leong Lee, Norwati Muhammad, Toshinori Okuda, Yoshihiko Tsumura, Yuji Isagi: Complex pollination of a tropical Asian rainforest canopy tree by flower-feeding Thrips and Thrips-Feeding predators. American Journal of Botany 10/2016; 103(11)., DOI:10.3732/ajb.1600316

Kuniaki Otake, Toshiaki Kondo, Sonoko Watanabe, Ikuko Masumoto, Katsumi Iwahori, Yuji Isagi: Isolation and characterization of microsatellite loci for the endangered wetland plant Adenophora palustris (Campanulaceae). APPLICATIONS IN PLANT SCIENCES 09/2016; 4(9)., DOI:10.3732/apps.1600056

Kun‐Kun Zhao, Hua‐Feng Wang, Shota Sakaguchi, Sven Landrein, Yuji Isagi, Masayuki Maki, Zhi‐Xin Zhu: Development and characterization of EST‐SSR markers in an East Asian temperate plant genus Diabelia (Caprifoliaceae). Plant Species Biology 09/2016;, DOI:10.1111/1442-1984.12143

Ayu Narita, Ayako Izuno, Yoshiteru Komaki, Takefumi Tanaka, Jin Murata, Yuji Isagi: Twenty Novel Polymorphic Microsatellite Primers in the Critically Endangered Melastoma tetramerum var. tetramerum (Melastomataceae). APPLICATIONS IN PLANT SCIENCES 09/2016; 4(9):1600053., DOI:10.3732/apps.1600053

Naoyuki Nakahama, Yuji Isagi: Availability of short microsatellite markers from butterfly museums and private specimens: Short microsatellite for dried specimens. Entomological Science 07/2016;, DOI:10.1111/ens.12215

Ayako Izuno, Masaomi Hatakeyama, Tomoaki Nishiyama, Ichiro Tamaki, Rie Shimizu-Inatsugi, Ryuta Sasaki, Kentaro K Shimizu, Yuji Isagi: Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations. Journal of Plant Research 04/2016; 129(4)., DOI:10.1007/s10265-016-0822-3

Naoyuki Nakahama, Kei Uchida, Atushi Ushimaru, Yuji Isagi: Timing of mowing influences genetic diversity and reproductive success in endangered semi-natural grassland plants. Agriculture Ecosystems & Environment 04/2016; 221(April):20-27., DOI:10.1016/j.agee.2016.01.029

Haruko Ando, Suzuki Setsuko, Kazuo Horikoshi, Hajime Suzuki, Shoko Umehara, Michimasa Yamasaki, Goro Hanya, Miho Inoue-Murayama, Yuji Isagi: Seasonal and inter-island variation in the foraging strategy of the critically endangered Red-headed Wood Pigeon Columba janthina nitens in disturbed island habitats derived from high-throughput sequencing. Ibis 04/2016; 158(2):n/a-n/a., DOI:10.1111/ibi.12345

Kenji Suetsugu, Naoyuki Nakahama, Azusa Ito, Masayuki Hino, Yuji Isagi: The Sweat Bee Lasioglossum occidens is a Potential Pollinator of Calanthe aristulifera in the Oceanic Izu Islands. Entomological News 03/2016; 125(5):368-373., DOI:10.3157/021.125.0509

Ayako Izuno, Akifumi S. Tanabe, Hirokazu Toju, Michimasa Yamasaki, Sapto Indrioko, Yuji Isagi: Structure of phyllosphere fungal communities in a tropical dipterocarp plantation: A massively parallel next-generation sequencing analysis. Mycoscience 03/2016; 57., DOI:10.1016/j.myc.2015.12.005

Naoyuki Nakahama, Ayako Izuno, Kurumi Arima, Yuji Isagi: Development of Microsatellite Markers For The Semi-Natural Grassland Herb Veronicastrum japonicum (Plantaginaceae). APPLICATIONS IN PLANT SCIENCES 02/2016; 4(2):1500096., DOI:10.3732/apps.1500096

Yumi Yamashita, Ayako Izuno, Yuji Isagi, Takahide Kurosawa, Shingo Kaneko: Isolation and Characterization of Novel Microsatellite Loci For The Endangered Orchid Cypripedium japonicum (Orchidaceae). APPLICATIONS IN PLANT SCIENCES 02/2016; 4(2):1500097., DOI:10.3732/apps.1500097

小熊宏之・井出玲子・井鷺裕司、UAV 観測画像を用いた絶滅危惧植物の花の自動検出手法、リモートセンシング学会誌 (accepted).

Fujii N, Takasawa S, Yokogawa M, Yamasaki T, Harada K, Kaneko S, Isagi Y, Novel Nuclear Microsatellite Markers Reveal Genetic Diversity and Structure of Veronicastrum sibiricum var. zuccarinii (Plantaginaceae) in the Aso Region, Kyushu, Japan. Acta Phytotaxonomica et Geobotanica 62(2):69-82. DOI: 10.18942/apg.

■□■□■□2015□■□■□■

Haruko ANDO, Hiroko OGAWA, Hajime SUZUKI, Kazuo HORIKOSHI, Fumiko NAKAHARA, Kazuto KAWAKAMI, Yuji ISAGI: First record of hybridization between subspecies of the Japanese Wood Pigeon Columba janthina on the Ogasawara Islands. Japanese Journal of Ornithology 12/2015; 64(2):261-265., DOI:10.3838/jjo.64.261

Yoshihiro Yamazaki, Shoji Naoe, Takashi Masaki, Yuji Isagi: Temporal variations in seed dispersal patterns of a bird-dispersed tree, Swida controversa (Cornaceae), in a temperate forest. Ecological Research 12/2015; 31(2)., DOI:10.1007/s11284-015-1324-9

Shota Sakaguchi, Takeshi Sugino, Yoshihiko Tsumura, Motomi Ito, M.D. Crisp, David M. J. S. Bowman, Atsushi J. Nagano, Mie N. Honjo, Masaki Yasugi, Hiroshi Kudoh, Yu Matsuki, Yoshihisa Suyama, Yuji Isagi: High-throughput linkage mapping of Australian white cypress pine (Callitris glaucophylla) and map transferability to related species. Tree Genetics & Genomes 12/2015; 11(6)., DOI:10.1007/s11295-015-0944-0

Naoyuki Nakahama, Yuki Hirasawa, Tsubasa Minato, Masahiro Hasegawa, Yuji Isagi, Takashi Shiga: Recovery of genetic diversity in threatened plants through use of germinated seeds from herbarium specimens. Plant Ecology 11/2015; 216(12)., DOI:10.1007/s11258-015-0547-8

Yuji Isagi, Takashi Oda, Keitaro Fukushima, Chunlan Lian, Masashi Yokogawa, Shingo Kaneko: Predominance of a single clone of the most widely distributed bamboo species Phyllostachys edulis in East Asia. Journal of Plant Research 11/2015; 129(1)., DOI:10.1007/s10265-015-0766-z

Yuzu Sakata, Joanne Itami, Yuji Isagi, Takayuki Ohgushi: Multiple and mass introductions from limited origins: genetic diversity and structure of Solidago altissima in the native and invaded range. Journal of Plant Research 10/2015; 128(6)., DOI:10.1007/s10265-015-0753-4

Yuichi Toma, Junichi Imanishi, Masashi Yokogawa, Hiroshi Hashimoto, Ayumi Imanishi, Yukihiro Morimoto, Yuki Hatanaka, Yuji Isagi, Shozo Shibata: Factors affecting the genetic diversity of a perennial herb Viola grypoceras A. Gray var. grypoceras in urban fragmented forests. Landscape Ecology 10/2015; 30(8)., DOI:10.1007/s10980-015-0197-1

Yuki Tsujii, Yusuke Onoda, Ayako Izuno, Yuji Isagi, Kanehiro Kitayama: A quantitative analysis of phenotypic variations of Metrosideros polymorpha within and across populations along environmental gradients on Mauna Loa, Hawaii. Oecologia 08/2015; 180(4)., DOI:10.1007/s00442-015-3416-1

Shota Sakaguchi, Guillaume Lannuzel, Bruno Fogliani, Adrien S. Wulff, Laurent L'Huillier, Seikan Kurata, Saneyoshi Ueno, Yuji Isagi, Yoshihiko Tsumura, Motomi Ito: Development of Nuclear and Chloroplast Microsatellite Markers for the Endangered Conifer Callitris sulcata (Cupressaceae). APPLICATIONS IN PLANT SCIENCES 08/2015; 3(8-8):1500045., DOI:10.3732/apps.1500045

Ikumi Dohzono, Shingo Kaneko, Jun Yokoyama, Yuji Isagi: Isolation and characterization of microsatellite loci from C orydalis ambigua (Papaveraceae): Corydalis ambigua Microsatellites. Plant Species Biology 06/2015; 31(2)., DOI:10.1111/1442-1984.12089

Fumiko Nakahara, Haruko Ando, Hideyuki Ito, Asako Murakami, Naoki Morimoto, Michimasa Yamasaki, Atsushi Takayanagi, Yuji Isagi: The applicability of DNA barcoding for dietary analysis of sika deer. DNA Barcodes 02/2015; 3(1)., DOI:10.1515/dna-2015-0021

Ayumi Imanishi, Shingo Kaneko, Yuji Isagi, Junichi Imanishi, Yosihiro Natuhara, Yukihiro Morimoto: Genetic Diversity and Structure of Euryale ferox Salisb. (Nymphaeaceae) in Japan. 

Naoyuki Nakahama, Ayako Izuno, Kurumi Arima, Yuji Isagi: Development of microsatellite markers for two endangered grassland butterflies, Melitaea ambigua and M. protomedia (Nymphalidae), using Ion Torrent next-generation sequencing. Conservation Genetics Resources 01/2015; 7(2)., DOI:10.1007/s12686-014-0412-4

安藤温子, 小川裕子, 鈴木創, 堀越和夫, 中原文子, 井鷺裕司 (2015) 小笠原諸島におけるカラスバトColumba janthinaの亜種間交雑個体の初記録. 日本鳥学会誌 64, 261-265. 

■□■□■□2014□■□■□■

Qian S, Saito W, Mimura M, Kaneko S, Isagi Y, Mizumachi E, Mori AS (2014) Asymmetric gene flow and the distribution of genetic diversity in morphologically distinct Abies mariesii populations in contrasting eco-habitats. Plant Ecology 215: 1385-1397.

Ando H, Ogawa H, Kaneko S, Takano H, Seki S, Suzuki H, Horikoshi K, Isagi Y, Genetic structure of the critically endangered Red-headed Wood Pigeon Columba janthina nitens and its implications for the management of threatened island populations. Ibis 156: 153-164.

Lee J-H, Lee D-H, Choi H-J, Suyama Y, Kondo T, Isagi Y, Choi B-H (2014) The distribution and poplation status of Quercus myrsinifolia (Fagaceae) on the Korean peninsula. Korean Journal of Plant Taxonomy 44: 165-170.

Ando H, Young L, Naughton M, Suzuki H, Deguchi T, Isagi Y (2014) Predominance of unbalanced gene flow from the western to central North Pacific colonies of the bleck-footed albatross. Pacific Science 68: 309-319.

Sakata Y, Yamasaki M, Isagi Y, Ohgushi T (2014) An exotic herbivorous insect drives the evolution of resistance in the exotic perennial herb Solidago altissima. Ecology 95: 2569-2578.

Worth JRP, Yokogawa M, Isagi Y (2014) Outcrossing rates and organelle inheritance estimated from two natural populations of the Japanese endemic conifer Sciadopitys verticillata. Journal of Plant Research 127: 617-626.

Worth JRP, Yokogawa M, Pérez-Figueroa A, Tsumura Y, Tomaru N, Janes JK, Isagi Y (2014) Conflict in outcomes for conservation based on population genetic diversity and genetic divergence approaches: A case study in the Japanese relictual conifer Sciadopitys verticillata (Sciadopityaceae). Conservation Genetics 15: 1243-1257.

Yoshikawa T, Isagi Y (2014) Negative effect of removing pulp from unripe fleshy fruits: seed germination pattern of Celtis sinensis in relation to the temporal context of fruit consumption. Journal of Forest Research 14: 411-416.

Ando H, Emura N, Denda T, Nakahama N, Inoue-Murayama M,Isagi Y (2014) Development of Microsatellite Markers for the Coastal Shrub Scaevola taccada (Goodeniaceae). Applications in Plant Sciences 2(5).

Izuno A, Sapto I, Widiyatno, Prasetyo E, Isagi Y (2014) Current plantation practices have negligible genetic effects on planted dipterocarps in the tropical rainforest. Silvae Genetica 62: 292-299.

Mizusawa L, Takimoto G, Yamasaki M, Isagi Y, Hasegawa M (2014) Comparison of pollination characteristics between the insular shrub Clerodendrum izuinsulare and its widespread congener C. trichotomum. Plant Species Biology 29: 73-84.

Yoshikawa T, Isagi Y (2014) Determination of temperate bird-flower interactions as entangled mutualistic and antagonistic sub-networks: characterization at the network and species levels. Journal of Animal Ecology 83: 651-660.

Sakaguchi S, Tsumura Y, Crisp MD, Bowman DMJS, Isagi Y (2014) Genetic evidence for paternal inheritance of the chrloplast in four Australian Callitris species (Cupressaceae). Journal of Forest Research 19: 244-248.

■□■□■□2013□■□■□■

Sakaguchi S, Bowman D, Prior L, Crisp M, Linde C, Tsumura Y, Isagi Y (2013) Climate, not Abriginal landscape burning, controlled the historical demography and distribution of fire-sensitive tree populations across Australia. Proceeding of the Royal Society B 280: .

Ando H, Setsuko S, Horikoshi K, Suzuki H, Umehara S, Inoue-Murayama M, Isagi Y (2013) Diet analysis by next-generation sequencing indicates the frequent consumption of introduced plants by the critically endangered red-headed wood pigeon (Columba janthina nitens) in oceanic island habitats. Ecology and Evolution 3: 4057-4069.

Higashi H, Sakaguchi S, Ikeda H, Isagi Y, Setoguchi H (2013) Multiple introgression events and range shifts in Schizocodon (Diapensiaceae) during the Pleistocene. Botanical Journal of the Linnean Society 173: 46-63.

Choi HJ, Kaneko S, Yokogawa M, Song G-P, Kin D-S, Kang S-H, Suyama Y, Isagi Y, Population and genetic status of a critically endangered species in Korea, Euchresta japonica (Leguminosae), and their implications for conservation. Journal of Plant Biology 56: 251-257.

Ando S, Kaneko S, Isagi Y, Repin R, Kitayama K (2013) Development of SSR markers for the tropical alpine tree species Leptospermum recurvum (Myrtaceae) on Mount Kinabalu in Borneo. Applications in Plant Sciences 1: 1200010.

Sakata Y, Ohgushi T, Isagi Y (2013) Geographic variations in phenotypic traits of the exotic herb Solidago altissima and abundance of recent established exotic herbivorous insects. Journal of Plant Interactions 8: 216-218.

Kaneko S, Abe T, Isagi Y (2013) Complete genotyping in conservation genetics, a case study of a critically endangered shrub, Stachyurus macrocarpus var. prunifolius (Stachyuraceae) in the Ogasawara Islands, Japan. Journal of Plant Research 126: 635-642.

Yamasaki T, Ozeki K, Fujii N, Takehara M, Yokogawa M, Kaneko S, Isagi Y (2013) Genetic diversity and structure of Silene kiusiana (Caryophyllaceae) in the Aso region, Kyushu, Japan, revealed by novel nuclear microsatellite markers. Acta Phytotaxonomica et Geobotanica 63: 107-120.

志賀隆・横川昌史・兼子伸吾・井鷺裕司 (2013) 全個体遺伝子型解析データに基づく市場に流通する絶滅危惧水生植物シモツケコウホネNuphar submersaとナガレコウホネN. x flumilalis (Nymphaeaceae)の種同定と産地同定. 保全生態学研究 18: 33-44.

Ito T, Kaneko S, Yokogawa M, Song G-P, Choi H-J, Isagi Y (2013) Isolation and characterization of microsatellite markers for Hydrangera luteovenosa (Hydrangeaceae), an endangered species in Korea. Korean Journal of Plant Taxonomy 43: 30-33.

Worth JRP, Sakaguchi S, Tanaka N, Yamasaki M, Isagi Y (2013) Northern richness and southern poverty: Contrasting genetic footprints of glacial refugia in the relictual tree Sciadopitys verticillata (Coniferales: Sciadopityaceae). Biological Journal of the Linnean Society 108: 263-277.

Sakata Y, Kaneko S, Hayano A, Murayama M, Ohgushi T, Isagi Y (2013) Isolation and characterization of microsatellite loci in the invasive herb Solidago altissima (Asteraceae). Applications in Plant Sciences 1(4) 1200313.

Goh WL, Chandran S, Franklin DC, Isagi Y, Koshy KC, Sungkaew S, Yang HQ, Xia NH, Wong KM (2013) Multi-gene region phylogenetic analyses suggest reticulate evolution and a clade of Australian origin among paleotropical woody bamboos (Poaceae: Bambusoideae: Bambuseae). Plant Systematics and Evolution 299: 239-257.

Yokogawa M, Kaneko S, Takahashi Y, Isagi Y (2013) Genetic consequences of rapid population decline and construction of restored populations of the critically endangered herb Polemonium kiushianum, and prediction of genetic effects of seed transfer from wild to restored populations. Biological Conservation 157: 401-408.

Emura N, Ando H, Kawakami K, Isagi Y (2103) Genetic and morphological differences among populations of the Japanese Bush-warbler (Aves: Sylviidae) on the Ogasawara Islands, Northern Pacific, Pacific Science 67: 187-196.

Kamioki M, Ando H, Isagi Y, Inoue-Murayama M (2013) Development of microsatellite markers for the Asian Stubtail Urosphena squameiceps by using next-generation sequencing technology. Conservation Genetics Resources 5: 1027-1029. 

Mc Mahon C, Isagi Y, Kaneko S, Bowman D, Brook B, Bradshaw C (2013) Successful invasion and spread of swamp buffalo in Australia: genetic structure of a harsh-climate survivor. Austral Ecology 38: 46-56.

■□■□■□2012□■□■□■

Sakaguchi S, Yamasaki M, Tanaka C, Isagi Y (2012) Examining the factors influencing leaf disease intensity of Kalopanax septemlobus (Thunb. ex Murray) Koidzumi (Araliaceae) over multiple spatial scales: from the individual, forest stand, to the regions in the Japanese Archipelago. Journal of Ecology and Field Biology 35: 1-7.

Mizusawa L, Takimoto G, Yamasaki M, Isagi Y, Hasegawa M (2012) Comparison of pollination characteristics between the insular shrub Clerodendrum izuinsulare and its widespread congener C. trichotomum. Plant Species Biology (in press).

Sakaguchi S, Qiu Y, Liu Y, Qi X, Kim S, Han J, Takeuchi Y, Worth J, Yamasaki M, Sakurai S, Isagi Y (2012) Climate oscillation during the Quaternary associated with landscape heterogeneity promoted allopatric lineage divergence of a temperate tree Kalopanax septemlobus (Araliaceae) in East Asia. Molecular Ecology 21: 3823-3838.

Nakahama N, Kaneko S, Hayano A, Isagi Y, Inoue-Murayama M, Tominaga T (2012) Development of microsatellite markers for the endangered grassland species Vincetoxicum pycnostelma (Apocynaceae), using next generation sequencing technology. Conservation Genetics Resources 4: 669-671, DOI: 10.1007/s12686-012-9619-4.

Izuno A, Takamiya M, Kaneko S, Isagi Y (2012) Genetic variation and structure of the endangered Lady Fern Athyrium viridescentipes based on ubiquitous genotyping. Journal of Plant Research 125: 613-618.

Kondo T, Crisp MD, Linde C, Bowman DMJS, Kawamura K, Kaneko S, Isagi Y (2012) Not an ancient relic: the endemic Livistona palms of arid central Australia could have been introduced by humans. Proceedings of the Royal Society B 279: 2652-2661.

Choi HJ, Jang HD, Isagi Y, Oh BU (2012) Distribution and conservation status of Scrophularia takesimensis (Scrophulariaceae), a critically endangered endemic species on Ulleung Island, Republic of Korea. Oryx 46: 399-402.

Sugawara H, Igawa T, Yokogawa M, Okuda M, Oumi S, Katsuren S, Kaneko S, Umino T, Isagi Y, Sumida M (2012) Isolation and characterization of ten microsatellite loci of endangered Anderson's crocodile newt, Echinotriton andersoni. Conservation Genetics Resources 4: 595-598.

Fukada C, Kaneko S, Yokogawa M, Kobayashi T, Ushimaru A, Isagi Y (2012) Development of ten microsatellite markers for Arisaema minus (Araceae), a vulnerable Japanese herb species. Conservation Genetics Resources 4: 495-497.

Araki KS, Kaneko S, Isagi Y, Kudoh H, Isokation and characterization of microsastellite loci in a clonal herb, Cardamine leucantha (Brassicaceae). American Journal of Botany (accepted).

Choi HJ, Kaneko S, Oh BU, Isagi Y (2012) Development of eight microsatellite markers for Corydalis hirtipes (Fumariaceae), a narrow endemic species of Korea. Conservation Genetics Resources 4: 407-409.

Masumoto I, Kaneko S, Ohtake K, Isagi Y (2012) Development of microsatellite markers for Adenophora palustris (Campanulaceae), a critically endangered wetland plant species in Japan. Conservation Genetics Resources 3:163-165.

Yoshikawa T, Isagi Y (2012) Dietary breadth of frugivorous birds in relation to their feeding strategies in the lowland forests of central Honshu, Japan. Oikos 121: 1041-1052.

Yoshikawa T, Masaki T, Isagi Y, Kikuzawa K (2012) Interspecific and annual variation in pre-dispersal seed predation by a granivorous bird in two East Asian hackberries, Celtis biondii and C. sinensis. Plant Biology 14: 506-514.

■□■□■□2011□■□■□■

Yoshikawa N, Kaneko S, Kuwabara K, Okumura N, Matsui M, Isagi Y (2011) Development of Microsatellite Markers for the Two Giant Salamander Species (Andrias japonicus and A. davidianus). Current Herpetology 30:177-180.

Mizusawa L, Kaneko S, Hasegawa M, Isagi Y (2011) Development of nuclear SSRs for the insular shrub Clerodendrum izuinsulare (Verbenaceae) and widespread C. trichotomum. American Journal of Botany 98: e333-e336.

Yokogawa M, Shiga T, Kaneko S, Isagi Y, Development of nuclear microsatellite markers for the critically endangered freshwater macrophyte, Nuphar submersa (Nymphaeaceae), and cross-species amplification in six additional Nuphar taxa. Conservation Genetics Resources (accepted).

Sakaguchi S, Uchiyama K, Ueno S, Ujino-Ihara T, Tsumura Y, Prior L, Bowman D, Crisp M, Isagi Y (2011) Isolation and characterization of 52 polymorphic EST-SSR markers for Callitris columellaris F. Muell. sensu lato (Cupressaceae), a conifer species with a wide ecological range in Australia. American Journal of Botany: e363-368.

Izuno A, Takamiya M, Isagi Y (2011) Microsatellite loci in an endangered fern species Athyrium viridescentipes (Woodsiaceae) and cross-species amplification. American Journal of Botany 98: e339-e341.

Ando H, Kaneko S, Suzuki H, Horikoshi K, Takano H, Ogawa H, Isagi Y (2011) Genetic diversity of the Japanese wood pigeon, Columba janthina, an endemic to islands of East Asia, estimated by newly developed microsatellite markers. Zoological Science 28: 891-896.

Kaneko S, Kondo T, Isagi Y (2011) Development of microsatellite markers for the northern Australian endemic fan palm Livistona rigida (Arecaceae), with cross-amplification in the five related species. Conservation Genetics Resources 3:697-699.

Sakaguchi S, Takeuchi Y, Yamasaki M, Sakurai S, Isagi Y (2011) Lineage admixture during postglacial range expansion is responsible for the increased gene diversity of Kalopanax septemlobus in a recently colonised territory. Heredity 107: 338-348.

Imanishi A, Kaneko S, Isagi Y, Imanishi J, Natuhara Y, Morimoto Y (2011) Development of microsatellite markers for Euryale ferox (Nymphaeaceae), an endangered aquatic plant species in Japan. American Journal of Botany 98: e233-235.

Mitsui Y, Nomura N, Isagi Y, Tobe H, Setoguchi H (2011) Ecological barriers to gene flow between riparian and forest species of Ainsliaea (Asteraceae). Evolution 65: 335-349.

Ando H, Kaneko S, Suzuki H, Horikoshi K, Chiba H, Isagi Y (2011) Lack of genetic differentiation among subpopulations of the black-footed albatross on the Bonin Islands. Journal of Zoology 283: 28-36.

■□■□■□2010□■□■□■

Yamazaki Y, Kaneko S, Naoe S, Masaki T, Isagi Y (2010) Isolation and characterization of 11 microsatellite loci in Swida controversa (Cornaceae). Conservation Genetics Resources 2:145-147.

Sakaguchi S, Sakurai S, Yamasaki M, Isagi Y (2010) How did the exposed seafloor function in postglacial northward range expansion of Kalopanax septemlobus? Evidence from ecological niche modelling. Ecological Research 25: 1183-1196.

Kubo M, Shimano K, Sakio H, Isagi Y, Ohno K (2010) Difference between sprouting traits of Cercidiphyllum japonicum and C. magnificum. Journal of Forest Research 15: 337-340.

Futai K, Isagi Y, Watanabe H (2010) The distribution pattern of Heritiera littoralis Dryand. on the Ryukyu Islands as affected by seed dispersal via ocean currents Tropics 19: 21-27

Bowman DMJS, Braby MF, Brown GK, Brown J, Cook LG, Crisp MD, Ford F, Haberle SG, Hughes J, Isagi Y, Joseph L, Ladiges PY, Mcbride J, Nelson G (2010) Biogeography of the monsoon tropics: Australia’s last biological frontier. Journal of Biogeography 37: 201-216.

Mizuki I, Yamasaki M, Kakutani T, Isagi Y (2010) Negligible impact of deer-induced habitat degradation on the genetic diversity of extant Bombus diversus populations in comparison with museum specimens. Journal of Insect Conservation 14: 191-198.

Takahashi A, Ichihara Y, Isagi Y, Shimada T (2010) Effects of tannin content on the survival of acorns from the specific decomposing fungus, Ciboria batschiana. Forest Pathology 40: 96-99.

Mitsui Y, Isagi Y, Setoguchi H (2010), Multiple spatial scale patterns of genetic diversity in riparian populations of Ainsliaea faurieana (Asteraceae) on Yakushima Island, Japan. American Journal of Botany 97: 101-110.

Crisp MD, Bowman DM, Isagi Y, Kato Y, Cook LG (2010) Livistona palms in Australia: ancient relics or opportunistic immigrants? Molecular Phylonenetics and Evolution 54: 512-523.

Sawa A, Kaneko S, Isagi Y, Mariko S, Masaki T (2010) Development and characterization of microsatellite markers for Prunus verecunda and Prunus grayana (Rosaceae). Conservation Genetics 11: 1167-1169.

■□■□■□2009□■□■□■

Maeda J, Kaneko S, Isagi Y, Tominaga T (2009) Isolation and characterization of polymorphic microsatellite loci for Imperata cylindrica, an invasive perennial grass. Conservation Genetics Resources (accepted).

Yoshikawa T, Isagi Y, Kikuzawa K (2009) Relationships between bird-dispersed plants and avian fruit consumers with different feeding strategies in Japan. Ecological Research 24: 1301-1312.

Tsuneki S, Mori K, Kaneko S, Isagi Y, Murakami N, Kato H (2009) Identification and characterization of eight microsatellite loci in Machilus pseudokobu (Lauraceae), an endemic species of the Bonin Islands. Conservation Genetics 10: 2009-2011.

Kondo T, Nakagoshi N, Isagi Y (2009) Shaping of the genetic structure along Pleistocene and modern river systems in hydrochorous riparian azarea, Rhododendron ripense (Ericaceae). American Journal of Botany 96: 1532-1543.

Kaneko S, Abe T, Isagi Y (2009) Development of microsatellite markers for Stachyurus macrocarpus and Stachyurus macrocarpus var. prunifolius (Stachyuraceae), critically endangered shrub species endemic to the Bonin Islands. Conservation Genetics 10: 1865-1867.

Yokogawa M, Kaneko S, Isagi Y (2009) Development of microsatellite markers for Polemonium kiushianum (Polemoniaceae), a critically endangered grassland plant species in Japan. Conservation Genetics 10: 1445-1447.

Nakamura M, Kaneko S, Isagi Y, Hata K, Sone K (2009) Development of microsatellite markers for Pasania edulis (Makino) Makino, one of the dominant species of lucidphyllous forest in southern Kyushu, Japan. Conservation Genetics 10: 981-983

Kawaji M, Kaneko S, Tateno R, Isagi Y, Yoneda T (2009) Development of microsatellite markers for Quercus miyagii Koidz. (Fagaceae), an endemic species in the Ryukyu Iskands, Japan. Conservation Genetics 10: 1049-1051.

Dan T, Ikeda H, Mitsui Y, Isagi Y, Setoguchi H (2009) Genetic structure of refugial populations of the temperate plant Shortia rotundifolia (Diapensiaceae) on a subtropical island. Conservation Genetics 10: 859-867.

兼子伸吾、瀬井純雄、高橋佳孝、井鷺裕司(2009)阿蘇地方および中国地方におけるヒゴタイEchinops setifer Iljinの現状. 保全生態学研究 14: 119-124.

Mitsui Y, Isagi Y, Setoguchi H (2009) Isolation and characterization of microsatellite loci in Ainsliaea faurieana (Asteraceae), an endemic plant species on Yakushima Island, Japan, and cross-species amplification in closely related taxa. Molecular Ecology Resorces 9: 877-879.

Dan T, Mitsui Y, Ikeda H, Isagi Y, Setoguchi H (2009) Isolation and characterization of microsatellite loci in Shortia rotundifolia (Diapensiaceae), an endangered relict plant on the Ryukyu Islands and Taiwan. Conservation Genetics 10: 507-509.

Terakawa M, Isagi Y, Matsui K, Yumoto T (2009) Microsatellite analysis of the maternal origin of Myrica rubra seeds in the feces of Japanese macaques. Ecological Research 24: 663-670.

■□■□■□2008□■□■□■

Franklin DC, Kaneko S, Yamasaki N, Isagi Y (2008) Some wild bamboo clumps contain more than one genet. Australian Journal of Botany 56: 433-436.

Kaneko S, Nakagoshi N, Isagi Y (2008) Origin of the endangered tetraploid Adonis ramosa (Ranunculaceae) assessed with chloroplast and nuclear DNA sequence data. Acta Phytotaxonomica et Geobotanica 59: 165-174.

Matsuki Y, Tateno R, Shibata M, Isagi Y (2008) Pollination efficiencies of flower-visiting insects as determined by direct genetic analysis of pollen grains. American Journal of Botany 95: 925-930.

Kaneko S, Isagi Y, Nobushima F (2008) Genetic differentiation among populations in an oceanic island: the case of Metrosideros boninesis, an endangered endemic tree species in the Bonin Islands. Plant Species Biology 23: 119-128.

Mori K, Kaneko S, Isagi Y, Murakami N, Kato H (2008) Isolation and characterization of ten microsatellite loci in Callicarpa subpubescens (Verbenaceae), an endemic species of the Bonin Islands. Molecular Ecology Resources 8: 1423-1425.

Katabuchi M, Isagi Y, Nakashizuka T (2008) Development of 17 maicrosatellite markers for Ceratosolen constrictus, the pollinating fig wasp of Ficus fistuolsa. Molecular Ecology Resources 8: 840-842.

Kaneko S, Franklin DC, Yamasaki N, Isagi Y (2008) Development of microsatellite markers for Bambusa arnhemica (Poaceae: Bambuseae), a bamboo endemic to northern Australia. Conservation Genetics 9: 1311-1313.

■□■□■□2007□■□■□■

Isagi Y, Saito D, Kawaguchi H, Tateno R, Watanabe S (2007) Effective pollen dispersal is enhanced by the genetic structure of an Aesculus turbinata population. Journal of Ecology 95: 983-990.

Shimatani K, Kimura M, Kitamura K, Suyama Y, Isagi Y, Sugita H (2007) Determining the location of a deceased mother tree and estimating forest regeneration parameters using microsatellites and spatial genetic models. Population Ecology 49: 317-330.

Bradshaw CJA, Isagi Y, Kaneko S, Frankham R, Brook BW, Bowman DMJS (2007) Low genetic diversity in the bottlenecked population of endangered non-native banteng in northern Australia. Molecular Ecology 16: 2998-3008.

Kaneko S, Isagi Y, Nakagoshi N (2007) Development of microsatellite markers for Echinops setifer (Asteraceae), an endangered grassland plant species in Japan. Conservatin Genetics 8: 1231-1233.

Katoh S, Kaneko S, Isagi Y, Murakami N, Kato H (2007) Isolation and characterization of microsatellite loci in Melicope quadrilocularis (Rutaceae), an endemic plant species of the Bonin Islands Japan, and cross-species amplification in closely related taxa. Conservation Genetics 8: 1487-1490.

Isagi Y, Tateno R, Matsuki Y, Hirao A, Watanabe S, Shibata M (2007) Genetic and reproductive consequences of forest fragmentation for populations of Magnolia obovata. Ecological Research 22: 382-389.

Kaneko S, Isagi Y, Nobushima F (2007) Development of microsatellite markers for Metrosideros boninensis (Myrtaceae), an endangered endemic plant species from the Bonin Islands, Japan. Conservation Genetics 8: 753-755.

Matsuki Y, Isagi Y, Suyama Y (2007) The determination of multiple microsatellite genotypes and DNA sequences from a single pollen grain. Molecular Ecology Notes 7: 194-198.

Ozeki M, Isagi Y, Tsubota H, Jacklyn P, Bowman DMJS (2007) Phylogeography of Australian termite, Amitermes laurensis (Isoptera, Termitidae), with special reference to the variety of mound shapes. Molecular Phylogenetics and Evolution 42: 236-247.

■□■□■□2006□■□■□■

Shiga T, Ishii J, Isagi Y, Kadono Y (2006) Nuphar submersa (Nymphaeaceae), a new species, from central Japan. Acta Phytotaxonomica et Geobotanica 57: 113-122.

Mabuhay JA, Nakagoshi N, Isagi Y (2006) Soil microbial biomass, abundance and diversity in a pine forest: first year after fire. Journal of Forest Research 11: 165-173.

Hirao AS, Kameyama Y, Ohara M, Isagi Y, Kudo G (2006) Seasonal changes in pollinator activity influence pollen dispersal and seed production in the alpine shrub Rhododendron aureum (Ericaceae). Molecular Ecology 15: 1165-1173.

Bradshaw CJA, Isagi Y, Kaneko S, Bowman DMJS, Brook BW, Campbell BM (2006) Conservation value of non-native banteng in northern Australia. Conservation Biology 20: 1306-1311.

Fujimori N, Kenta T, Kondo T, Kameyama Y, Isagi Y, Nakashizuka T (2006) Microsatellite loci for a sparsely distributed species, Kalopanax pictus (Araliaceae) in Japanese temperate forests. Molecular Ecology Notes 6: 468-469.

Sato T, Isagi Y, Sakio H, Osumi K, Goto S (2006) Effect of gene flow on spatial genetic structure in the riparian canopy tree Cercidiphyllum japonicum revealed by microsatellite analysis. Heredity 96: 79-84.

Mabuhay JA., Isagi Y, Nakagoshi N (2006) Wildfire effects on microbial biomass and diversity in a pine forest at three topographic positions. Ecological Research 21: 54-63.

■□■□■□2005□■□■□■

Kaneko S, Isagi Y, Nakagoshi N (2005) A new locality for Adonis multiflora Nishikawa & Ko. Ito (Ranunculaceae) in Hiroshima Prefecture. Acta Phytotaxonomica et Geobotanica 56: 261-263.

Mabuhay J, Isagi Y, Nakagoshi N (2005) Ecological indicators of biodiversity in tropical urban green spaces. WSEAS Transactions on Environment and Development 1: 85-91.

Leksono AS, Nakagoshi N, Isagi Y (2005) The effect of forest disturbance on flying insect assembrages in Trawas, East Java. Tropics 14: 335-343

Jacklyn P, Bowman DMJS, Isagi Y (2005) Terracotta hervbivores. Nature Australia 28: 50-55.

Isagi Y, Kudo M, Osumi K, Sato T, Sakio H (2005) Polymorphic microsatellite DNA markers for a relict angiosperm Cercidiphyllum japonicum Sieb. et Zucc and their utility for C. magnificum. Molecular Ecology Notes 5: 596-598.

Mabuhay, J.A., Nakagoshi, N. & Isagi, Y (2005) Microbial responses to organic and inorganic amendments in eroded soil. Land Degradation & Development 16: 1-12.

Rodiyati A, Arisoesilaningsih E, Isagi Y, Nakagoshi N (2005) Responses of Cyperus brevifolius (Rottb.) Hassk. and Cyperus kyllingia Endl. to varying soil water availability. Environmental and Experimental Botany 53: 259-269.

■□■□■□2004□■□■□■

Isagi Y, Kanazashi T, Suzuki W, Tanaka H, Abe T (2004) Highly variable pollination patterns in Magnolia obovata revealed by microsatellite paternity analysis. International Journal of Plant Sciences 165: 1047-1053.

Kenta T, Isagi Y, Nakagawa M, Yamashita M, Nakashizuka T (2004) Variation in pollen dispersal between years with different pollination conditions in a tropical emergent tree. Molecular Ecology 13: 3575-3584.

島谷健一郎・齊藤大輔・川口英之・舘野隆之輔・井鷺裕司(2004) 空間的遺伝構造と分化の図示―その変化でgene flow を観る試み―．日本生態学会誌 54: 165－178.

Isagi Y, Shimada K, Kushima H, Tanaka N, Nagao A, Ishikawa T, Onodera H, Watanabe S (2004) Clonal structure and flowering traits of a bamboo (Phyllostachys pubescens (Mazel) Ohwi) stand grown from a simultaneous flowering as revealed by AFLP analysis. Molecular Ecology 13: 2017-2021.

井鷺裕司 (2004) マイクロサテライトマーカーで明らかになった低頻度出現種の更新プロセス．日本林学会誌 86: 169-176.

Mabuhay JA, Isagi Y, Nakagoshi N (2004) Microbial biomass, abundance and community diversity determined by terminal restriction fragment length polymorphism analysis in soil at varying periods after occurrence of forest fire. Microbes and Environments 19: 154-162.

Mabuhay JA, Nakagoshi N, Isagi Y (2004) Influence of erosion on soil microbial biomass, abundance and community diversity. Land Degradation & Development 15: 1-13.

■□■□■□2002□■□■□■

Kikuchi S, Isagi Y (2002) Microsatellite genetic variation in small and isolated populations of Magnolia sieboldii ssp. japonica. Heredity 88: 313-321.

Kameyama Y, Isagi Y, Nakagoshi N (2002) Relatedness structure in Rhododendron metternichii var. hondoense revealed by microsatellite analysis. Molecular Ecology 11: 519-528.

Isagi Y, Kenta T, Nakashizuka T (2002) Microsatellite loci for a tropical emergent tree, Dipterocarpus tempehens V. Sl (Dipterocarpaceae) Molecular Ecology Notes 2: 12-13.

Hakim L, Nakagoshi N, Isagi Y (2002) Conservation ecology of Giganthochloa manggong: an endemic bamboo at Java, Indonesia. Journal of International Development and Cooperation 9: 1-16.

■□■□■□2001□■□■□■

Azrianingsih R, Nakagoshi N, Isagi Y (2001) Morphological variability of Kyllinga found in Malang, Indonesia: a perception for its taxonomy. Hikobia 13: 355-362.

Kameyama Y, Isagi Y, Nakagoshi N (2001) Patterns and levels of gene flow in Rhododendron metternichii var. hondoense revealed by microsatellite analysis. Molecular Ecolgoy 10: 205-216.

Isagi Y, Honjo M, Washitani I (2001) Development of microsatellite markers for Primula sieboldii using degenerate oligonucleotide-primed PCR-amplified DNA. Molecular Ecology Notes 1:22-24.

■□■□■□2000□■□■□■

Isagi Y, Kanazashi T, Suzuki W, Tanaka H, Abe T. (2000) Microsatellite analysis on regeneration process of Magnolia obovata. Heredity 84: 143-151.

Kameyama Y, Isagi Y, Naito K, Nakagoshi N. (2000) Microsatellite analysis of pollen flow in Rhododendron metternichii var. hondoense. Ecological Research 15: 263-270.

Miyazaki Y, Isagi Y (2000) Pollen flow and intrapopulation genetic structure of Heloniopsis orientalis on forest floor determined using microsatellite markers. Theoretical and Applied Genetics 101: 718-723.

Kitahara E, Isagi Y, Ishibashi Y, Saitoh T (2000) Polymorphic microsatellite DNA markers in the Asiaticblack bear Ursus thibetanus. Molecular Ecology 9: 1661-1662.

■□■□■□1999□■□■□■

Isagi Y, Kanazashi T, Suzuki W, Tanaka H, Abe T (1999) Polymorphic DNA markers for Magnoliao bovata Thumb. and their utility in the related species. Molecular Ecology 8: 698-700.

Miyazaki Y, Isagi Y, Tabata H (1999) Polymorphic microsatellite markers in perennial herb Heloniopsis orientalis (Thunb.) C. Tanaka. Molecular Ecology 8: 1361-1362.

Naito K, Isagi Y, Kameyama Y, Nakagoshi N (1999) Population structures in Rhododendron metternichii var. hondoense assessed with microsatellites and its implication for the conservation. Journal of Plant Research 112: 405-412.

■□■□■□1998□■□■□■

Naito K, Isagi Y, Nakagoshi N (1998) Isolation and characterization of microsatellites of Rhododendron metternichii Sieb. et Zucc. var. hondoense Nakai. Molecular Ecology 7: 927-928.

Minami E, Isagi Y, Kaneko, Y, Kawaguchi H (1998) Polymorphic microsatellite markers in Japanese horse chestnut Aesculus turbinata Blume. Molecular Ecology 7: 1616-1617.

■□■□■□1997□■□■□■

Isagi Y, Kawahara T, Kamo K, Ito H (1997) Net production and carbon cycling in a bamboo Phyllostachys pubescens stand.Plant Ecology 130: 41-52.

Isagi Y, Sugimura K, Sumida A, Ito H (1997) How does masting happen and synchronize? Journal of Theoretical Biology 187: 231-239.

Isagi Y, Suhandono S (1997) PCR primers amplifying microsatellite loci of Quercus myrsinifolia Blume and their conservation between oak species. Molecular Ecology 6: 897-899.

Isagi Y, Torii A (1997) Range expansion and its mechanism in a naturalized bamboo species,Phyllostachys pubescens, in Japan. Journal of Sustainable Forestry 6: 127-142.

Sumida A, Ito H, Isagi Y (1997) Trade-off between height growth and stem diameter growth for anevergreen oak,Quercusglauca, in a mixed hardwood forest. Functional Ecology 11:300-309.

Ito H, Sumida A, Isagi Y, Kamo (1997) The crown shape of an evergreen oak,Quercusglauca, in ahardwood community.Journal of Forest Research 2:85-88.

鳥居厚志・井鷺裕司(1997)京都府南部における竹林の分布拡大.日本生態学会誌47:31-41.

Books 

井鷺裕司(2015)絶滅危惧植物図鑑レッドデータプランツ増補改訂版(矢原徹一 , 藤井伸二, 伊藤元己, 海老原淳 (監修), 永田芳男 (写真) )「トキワマンサク」、山と渓谷社.

Isagi Y, Kaneko S (2014) Ubiquitous genotyping for conservation of endangered plant species. In Nakano S, Yahara T and Nakashizuka T (Eds.) Integrative Observations and Assessments. Springer, pp. 311-325. 

井鷺裕司(2013)行動生物学辞典(上田ほか編)「遺伝子流動」「遺伝的組換え」「遺伝マーカー」「外交配」「近交係数」「近交弱勢」「近親交配」「限性遺伝」「交雑」「集団遺伝構造」「性連鎖」「対立遺伝子」「対立遺伝子頻度」「超優性」「二倍体」「瓶首効果」「マイクロサテライト解析」「ミトコンドリアDNA」「戻し交配」「優性遺伝」「量的形質遺伝子座」「連鎖不平衡」、東京化学同人.

井鷺裕司・陶山佳久(2013)生態学者が書いたDNAの本、文一総合出版.

井鷺裕司(2012)遺伝的変異と空間的遺伝構造、「エコゲノミクス―遺伝子からみた適応―」、共立出版.

井鷺裕司(2012)集団内の遺伝的動態、「森林遺伝育種学」、文永堂出版.

井鷺裕司(2012)遺伝子の多様性、「生物多様性と生態学-遺伝子・種・生態系」、朝倉書店.

井鷺裕司(2012)絶滅危惧種の分子保全遺伝学、「新・森の分子生態学」、文一総合出版.

Isagi Y (2011) Significance of single-pollen genotyping in ecological research., In Isagi Y & Suyama Y (eds.), Single-Pollen Genotyping. Springer, pp. 1-6.

Matsuki Y, Tomita M, Isagi Y (2011) Pollination efficiencies of insects visiting Magnolia obovata, as determined by single-pollen genotyping. In Isagi Y & Suyama Y (eds.), Single-Pollen Genotyping. Springer, pp. 17-32.

Kondo T, Nishimura S, Naito Y, Tsumura Y, Okuda T, Ng KKS, Lee SL, Muhammad N, Nakagoshi N, Isagi Y (2011) Can tiny thrips provide sufficient pollination service during a general flowering period in tropical rainforest?. In Isagi Y & Suyama Y (eds.), Single-Pollen Genotyping. Springer, pp. 63-82.

松木悠・井鷺裕司(2009)花粉の遺伝解析で知る本当の虫媒効率、「昆虫科学が拓く未来」、pp 95-98、京都大学学術出版会

Isagi Y, Tateno R, Matsuki Y, Hirao A, Watanabe S, Shibata M (2007) Genetic and reproductive consequences of forest fragmentation for populations of Magnolia obovata., In Nakashizuka T (ed.), Sustainability and Diversity of Forest Ecosystems. Springer, pp. 25-32.

井鷺裕司・金子有子・近藤俊明(2005)琵琶湖周辺に生育するヨシのクローン構造、「内湖からのメッセージ」、pp 67-74、サンライズ出版

井鷺裕司・亀山慶晃・志賀隆・見永亜希子・上川愛(2005)琵琶湖周辺に生育する希少植物の遺伝的性質、「内湖からのメッセージ」、pp 92-101、サンライズ出版

井鷺裕司(2003)豊凶、「生態学事典」、pp. 506-508、共立出版

Isagi Y, Kanazashi T (2002) Gene flow analysis of Magnolia obovata Thunb. using highly variable microsatellite markers., In Nakashizuka T & Matsumoto Y (eds), Diversity and Interaction in a Temperate Forest Community. Springer, pp. 257-272.

井鷺裕司(2001)マイクロサテライトで探る樹木の更新過程、「森の分子生物学(共著)」、pp 59-84、文一総合出版

井鷺裕司(2001)マイクロサテライトマーカー分析法、「森の分子生物学(共著)」、pp 275-304、文一総合出版

Isagi Y, Kawahara T, Ito H (1997) A computer-aided management system of Phyllostachys stands basedon the ecological characterisics of the carbon cycring., In Chapman. G. P. (ed.), The Bamboos. Academic Press, London, pp 125-134.

その他 

井鷺裕司(2013)全個体遺伝子型解析による絶滅危惧植物の保全、地球環境 18: 153-158.

長池卓男・西川浩己・飯島勇人・北原正彦・杉田幹夫・中野隆志・上橋宏司・亀井忠文・横川昌史・井鷺裕司・中村健一・田村哲生・竹田謙一 (2012)南アルプスにおけるニホンジカによる高山植物への影響と保護対策および個体数管理に関する研究、山梨県総合理工学研究機構研究報告書 7: 47-53.

横川昌史・井鷺裕司(2012)北岳に生育するミヤマハナシノブ全4集団における遺伝的多様性と遺伝構造、山梨県総合理工学研究機構研究報告書 7: 59-62.

志賀隆・横川昌史・兼子伸吾・井鷺裕司(2012)全個体遺伝子型解析で絶滅危惧種を護：シモツケコウホネを例にして、Nature Study 58 (印刷中).

松木悠・井鷺裕司、花粉粒の直接遺伝解析法を用いたホオノキ訪花昆虫の送粉効率評価（投稿中）.

松木悠・井鷺裕司(2011)ホオノキ訪花昆虫の送受粉への貢献-花粉粒の直接遺伝解析による評価-、北方林業 63: 321-324.

井鷺裕司(2011)遺伝子で見る森林樹木の繁殖・更新プロセス、森林科学 62:8-12.

畑中佑紀・井鷺裕司(2011)都市の植物個体群における遺伝的特徴の不均一性、日本緑化工学会誌 36: 377-380.

安部哲人・横川昌史・兼子伸吾・井鷺裕司(2010)阿蘇の草原性絶滅危惧植物と林業、九州の森と林業94: 1-3.

井鷺裕司(2010)遺伝的多様性-その意味と重要性-、ビオフォリア23: 19-23.

井鷺裕司(2010)多様なタケの繁殖生態研究におけるクローン構造と移植履歴の重要性、日本生態学会誌60: 89-95.

井鷺裕司(2009)研究室訪問シリーズ(7)-京都大学大学院農学研究科森林科学専攻森林生物学研究室、林木の育種 233: 41-43.

井鷺裕司(2009)生態系・生物多様性モニタリングの統合に向けて 森林の遺伝的多様性、遺伝 63: 39-43.

井鷺裕司(2008)遺伝子攪乱、環境教育 38: 2451-2459.

井鷺裕司(2007)森林で花粉はどの様にうごいているのか、森林科学 50: 42-45.

井鷺裕司(2006)森林の遺伝的多様性をはかる、森林科学 46: 56.

非常勤講師 

科学研究費補助金によるプロジェクト（代表） 

科学研究費補助金によるプロジェクト（分担等） 

科学研究費補助金用情報 

機関番号:14301, 部局所属番号:883, e-Rad部局番号:15, 職番号:20, 研究者番号:50325130

外部資金によるプロジェクト（代表） 

外部資金によるプロジェクト（分担） 

各種委員等（学外）現在 

各種委員等（学外）過去 

受賞 

講演会