conda-packages-4.8.0
Disclaimer
This page may be slightly out of date. To check the packages manually, load miniconda3-4.8.0 and view the environments and packages (refer to below). the '*' denotes which environment is loaded.
> module load General/miniconda3/4.8.0
> conda env list
# conda environments:
#
base * /vol/apps/hpc/stow/miniconda3/4.8.1
phyloFlashEnv /vol/apps/hpc/stow/miniconda3/4.8.1/envs/phyloFlashEnv
> conda list
Packages in: base
> conda list
# packages in environment at /vol/apps/hpc/stow/miniconda3/4.8.1:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 0_gnu conda-forge
alabaster 0.7.12 py_0 conda-forge
appdirs 1.4.3 py_1 conda-forge
argh 0.26.2 py37_1001 conda-forge
astroid 2.3.3 py37_1 conda-forge
atomicwrites 1.3.0 py_0 conda-forge
attrs 19.3.0 py_0 conda-forge
autopep8 1.5 py_0 conda-forge
babel 2.8.0 py_0 conda-forge
backcall 0.1.0 py_0 conda-forge
bleach 3.1.0 py_0 conda-forge
bzip2 1.0.8 h516909a_2 conda-forge
ca-certificates 2019.11.28 hecc5488_0 conda-forge
cartopy 0.17.0 py37h423102d_1009 conda-forge
certifi 2019.11.28 py37_0 conda-forge
cffi 1.13.2 py37h8022711_0 conda-forge
cftime 1.0.4.2 py37hc1659b7_0 conda-forge
chardet 3.0.4 py37_1003 conda-forge
cloudpickle 1.2.2 py_1 conda-forge
conda 4.8.0 py37_1 conda-forge
conda-package-handling 1.6.0 py37h516909a_1 conda-forge
cryptography 2.8 py37h72c5cf5_1 conda-forge
curl 7.65.3 hf8cf82a_0 conda-forge
cycler 0.10.0 py_2 conda-forge
dbus 1.13.6 he372182_0 conda-forge
decorator 4.4.1 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
diff-match-patch 20181111 py_0 conda-forge
docutils 0.16 py37_0 conda-forge
entrypoints 0.3 py37_1000 conda-forge
esmf 8.0.0 nompi_he6d0a24_4 conda-forge
expat 2.2.5 he1b5a44_1004 conda-forge
flake8 3.7.9 py37_0 conda-forge
fontconfig 2.13.1 h86ecdb6_1001 conda-forge
freetype 2.10.0 he983fc9_1 conda-forge
future 0.18.2 py37_0 conda-forge
geos 3.8.0 he1b5a44_0 conda-forge
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
glib 2.58.3 py37h6f030ca_1002 conda-forge
gsl 2.5 h294904e_1 conda-forge
gst-plugins-base 1.14.5 h0935bb2_0 conda-forge
gstreamer 1.14.5 h36ae1b5_0 conda-forge
hdf4 4.2.13 hf30be14_1003 conda-forge
hdf5 1.10.5 nompi_h3c11f04_1104 conda-forge
icu 64.2 he1b5a44_1 conda-forge
idna 2.8 py37_1000 conda-forge
imagesize 1.2.0 py_0 conda-forge
importlib_metadata 1.4.0 py37_0 conda-forge
intervaltree 3.0.2 py_0 conda-forge
ipykernel 5.1.3 py37h5ca1d4c_0 conda-forge
ipython 7.11.1 py37h5ca1d4c_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
isort 4.3.21 py37_0 conda-forge
jedi 0.14.1 py37_0 conda-forge
jeepney 0.4.2 py_0 conda-forge
jinja2 2.10.3 py_0 conda-forge
jpeg 9c h14c3975_1001 conda-forge
json5 0.8.5 py_0 conda-forge
jsonschema 3.2.0 py37_0 conda-forge
jupyter_client 5.3.4 py37_1 conda-forge
jupyter_core 4.6.1 py37_0 conda-forge
jupyterlab 1.2.4 py_0 conda-forge
jupyterlab_server 1.0.6 py_0 conda-forge
keyring 21.1.0 py37_0 conda-forge
kiwisolver 1.1.0 py37hc9558a2_0 conda-forge
krb5 1.16.4 h2fd8d38_0 conda-forge
lazy-object-proxy 1.4.3 py37h516909a_0 conda-forge
libblas 3.8.0 14_openblas conda-forge
libcblas 3.8.0 14_openblas conda-forge
libclang 9.0.1 default_hde54327_0 conda-forge
libcurl 7.65.3 hda55be3_0 conda-forge
libedit 3.1.20181209 hc058e9b_0
libffi 3.2.1 he1b5a44_1006 conda-forge
libgcc-ng 9.2.0 h24d8f2e_2 conda-forge
libgfortran-ng 7.3.0 hdf63c60_4 conda-forge
libgomp 9.2.0 h24d8f2e_2 conda-forge
libiconv 1.15 h516909a_1005 conda-forge
liblapack 3.8.0 14_openblas conda-forge
libllvm9 9.0.1 hc9558a2_0 conda-forge
libnetcdf 4.7.3 nompi_h9f9fd6a_101 conda-forge
libopenblas 0.3.7 h5ec1e0e_6 conda-forge
libpng 1.6.37 hed695b0_0 conda-forge
libsodium 1.0.17 h516909a_0 conda-forge
libspatialindex 1.9.3 he1b5a44_1 conda-forge
libssh2 1.8.2 h22169c7_2 conda-forge
libstdcxx-ng 9.2.0 hdf63c60_2 conda-forge
libtiff 4.1.0 hc3755c2_3 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxkbcommon 0.9.1 hebb1f50_0 conda-forge
libxml2 2.9.10 hee79883_0 conda-forge
lz4-c 1.8.3 he1b5a44_1001 conda-forge
markupsafe 1.1.1 py37h516909a_0 conda-forge
matplotlib-base 3.1.2 py37h250f245_1 conda-forge
mccabe 0.6.1 py_1 conda-forge
metpy 0.12.0 py_0 conda-forge
mistune 0.8.4 py37h516909a_1000 conda-forge
more-itertools 8.1.0 py_0 conda-forge
nbconvert 5.6.1 py37_0 conda-forge
nbformat 5.0.4 py_0 conda-forge
nco 4.9.1 nompi_hc6225f9_0 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
netcdf-fortran 4.5.2 nompi_h09cde99_103 conda-forge
netcdf4 1.5.3 nompi_py37hd35fb8e_102 conda-forge
notebook 6.0.3 py37_0 conda-forge
nspr 4.24 he1b5a44_0 conda-forge
nss 3.47 he751ad9_0 conda-forge
numpy 1.17.5 py37h95a1406_0 conda-forge
numpydoc 0.9.2 py_0 conda-forge
olefile 0.46 py_0 conda-forge
openssl 1.1.1d h516909a_0 conda-forge
owslib 0.19.0 py_2 conda-forge
packaging 20.0 py_0 conda-forge
pandas 0.25.3 py37hb3f55d8_0 conda-forge
pandoc 2.9.1.1 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
parso 0.5.2 py_0 conda-forge
pathlib 1.0.1 py37_1 conda-forge
pathtools 0.1.2 py_1 conda-forge
pcre 8.43 he1b5a44_0 conda-forge
pexpect 4.8.0 py37_0 conda-forge
pickleshare 0.7.5 py37_1000 conda-forge
pillow 7.0.0 py37hefe7db6_0 conda-forge
pint 0.10.1 py_0 conda-forge
pip 20.0.1 py37_0 conda-forge
pluggy 0.12.0 py_0 conda-forge
pooch 0.7.2 py_0 conda-forge
proj 6.2.1 hc80f0dc_0 conda-forge
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 3.0.2 py_0 conda-forge
psutil 5.6.7 py37h516909a_0 conda-forge
pthread-stubs 0.4 h14c3975_1001 conda-forge
ptyprocess 0.6.0 py_1001 conda-forge
pycodestyle 2.5.0 py_0 conda-forge
pycosat 0.6.3 py37h516909a_1002 conda-forge
pycparser 2.19 py37_1 conda-forge
pydocstyle 5.0.2 py_0 conda-forge
pyepsg 0.4.0 py_0 conda-forge
pyflakes 2.1.1 py_0 conda-forge
pygments 2.5.2 py_0 conda-forge
pykdtree 1.3.1 py37hc1659b7_1002 conda-forge
pylint 2.4.4 py37_0 conda-forge
pyopenssl 19.1.0 py37_0 conda-forge
pyparsing 2.4.6 py_0 conda-forge
pyproj 2.4.2.post1 py37h12732c1_0 conda-forge
pyqt 5.12.3 py37hcca6a23_1 conda-forge
pyqt5-sip 4.19.18 pypi_0 pypi
pyqtwebengine 5.12.1 pypi_0 pypi
pyrsistent 0.15.7 py37h516909a_0 conda-forge
pyshp 2.1.0 py_0 conda-forge
pysocks 1.7.1 py37_0 conda-forge
python 3.7.4 h265db76_1
python-dateutil 2.8.1 py_0 conda-forge
python-jsonrpc-server 0.3.4 py_0 conda-forge
python-language-server 0.31.7 py37_0 conda-forge
pytz 2019.3 py_0 conda-forge
pyxdg 0.26 py_0 conda-forge
pyyaml 5.3 py37h516909a_0 conda-forge
pyzmq 18.1.1 py37h1768529_0 conda-forge
qdarkstyle 2.7 py_0 conda-forge
qt 5.12.5 hd8c4c69_1 conda-forge
qtawesome 0.6.1 py_0 conda-forge
qtconsole 4.6.0 py_0 conda-forge
qtpy 1.9.0 py_0 conda-forge
readline 7.0 hf8c457e_1001 conda-forge
requests 2.22.0 py37_1 conda-forge
rope 0.16.0 py_0 conda-forge
rtree 0.9.3 py37h7b0cdae_0 conda-forge
ruamel_yaml 0.15.80 py37h516909a_1000 conda-forge
scipy 1.4.1 py37h921218d_0 conda-forge
secretstorage 3.1.2 py37_0 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 45.1.0 py37_0 conda-forge
shapely 1.6.4 py37h5d51c17_1007 conda-forge
six 1.14.0 py37_0 conda-forge
snowballstemmer 2.0.0 py_0 conda-forge
sortedcontainers 2.1.0 py_0 conda-forge
sphinx 2.3.1 py_0 conda-forge
sphinxcontrib-applehelp 1.0.1 py_0 conda-forge
sphinxcontrib-devhelp 1.0.1 py_0 conda-forge
sphinxcontrib-htmlhelp 1.0.2 py_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.2 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.3 py_0 conda-forge
spyder 4.0.1 py37_0 conda-forge
spyder-kernels 1.8.1 py37_0 conda-forge
sqlite 3.30.1 h7b6447c_0
tempest-remap 2.0.3 nompi_hfc2589c_107 conda-forge
terminado 0.8.3 py37_0 conda-forge
testpath 0.4.4 py_0 conda-forge
tk 8.6.10 hed695b0_0 conda-forge
tornado 6.0.3 py37h516909a_0 conda-forge
tqdm 4.41.1 py_0 conda-forge
traitlets 4.3.3 py37_0 conda-forge
typed-ast 1.4.1 py37h516909a_0 conda-forge
udunits2 2.2.27.6 h4e0c4b3_1001 conda-forge
ujson 1.35 py37h516909a_1001 conda-forge
urllib3 1.25.7 py37_0 conda-forge
watchdog 0.9.0 py37_1 conda-forge
wcwidth 0.1.8 py_0 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.33.6 py37_0 conda-forge
wrapt 1.11.2 py37h516909a_0 conda-forge
wrf-python 1.3.2 py37h7eb8c7e_1 conda-forge
wurlitzer 2.0.0 py37_0 conda-forge
xarray 0.14.1 py_1 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xz 5.2.4 h14c3975_1001 conda-forge
yaml 0.2.2 h516909a_1 conda-forge
yapf 0.28.0 py_0 conda-forge
zeromq 4.3.2 he1b5a44_2 conda-forge
zipp 2.0.0 py_2 conda-forge
zlib 1.2.11 h516909a_1006 conda-forge
zstd 1.4.4 h3b9ef0a_1 conda-forge
Packages in: phyloFlashEnv
phyloFlashEnv exists to have the PhyloFlash package installed. It would not install into base, so it was necessary to build a new environment to load it into.
> conda list
# packages in environment at /vol/apps/hpc/stow/miniconda3/4.8.1/envs/phyloFlashEnv:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 0_gnu conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
alsa-lib 1.1.5 h516909a_1002 conda-forge
bbmap 38.75 h516909a_0 bioconda
bedtools 2.29.2 hc088bd4_0 bioconda
binutils_impl_linux-64 2.33.1 h53a641e_8 conda-forge
binutils_linux-64 2.33.1 h9595d00_16 conda-forge
biopython 1.76 py27h516909a_0 conda-forge
bowtie 1.2.3 py27hc9558a2_0 bioconda
bwidget 1.9.14 0 conda-forge
bzip2 1.0.8 h516909a_2 conda-forge
ca-certificates 2019.11.28 hecc5488_0 conda-forge
cairo 1.16.0 hfb77d84_1002 conda-forge
certifi 2019.11.28 py27_0 conda-forge
curl 7.65.3 hf8cf82a_0 conda-forge
emirge 0.61.1 py27hebb334c_3 bioconda
fontconfig 2.13.1 h86ecdb6_1001 conda-forge
freetype 2.10.0 he983fc9_1 conda-forge
fribidi 1.0.5 h516909a_1002 conda-forge
gcc_impl_linux-64 7.3.0 hd420e75_4 conda-forge
gcc_linux-64 7.3.0 h553295d_16 conda-forge
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
gfortran_impl_linux-64 7.3.0 hdf63c60_4 conda-forge
gfortran_linux-64 7.3.0 h553295d_16 conda-forge
giflib 5.2.1 h516909a_1 conda-forge
glib 2.58.3 py27h6f030ca_1002 conda-forge
graphite2 1.3.13 hf484d3e_1000 conda-forge
gsl 2.5 h294904e_1 conda-forge
gxx_impl_linux-64 7.3.0 hdf63c60_4 conda-forge
gxx_linux-64 7.3.0 h553295d_16 conda-forge
harfbuzz 2.4.0 h9f30f68_3 conda-forge
htslib 1.10.2 h78d89cc_0 bioconda
icu 64.2 he1b5a44_1 conda-forge
jpeg 9c h14c3975_1001 conda-forge
krb5 1.16.4 h2fd8d38_0 conda-forge
lcms2 2.9 hbd6801e_1 conda-forge
ld_impl_linux-64 2.33.1 h53a641e_8 conda-forge
libblas 3.8.0 14_openblas conda-forge
libcblas 3.8.0 14_openblas conda-forge
libcurl 7.65.3 hda55be3_0 conda-forge
libdeflate 1.3 h516909a_0 conda-forge
libedit 3.1.20170329 hf8c457e_1001 conda-forge
libffi 3.2.1 he1b5a44_1006 conda-forge
libgcc-ng 9.2.0 h24d8f2e_2 conda-forge
libgfortran-ng 7.3.0 hdf63c60_4 conda-forge
libgomp 9.2.0 h24d8f2e_2 conda-forge
libiconv 1.15 h516909a_1005 conda-forge
liblapack 3.8.0 14_openblas conda-forge
libopenblas 0.3.7 h5ec1e0e_6 conda-forge
libpng 1.6.37 hed695b0_0 conda-forge
libssh2 1.8.2 h22169c7_2 conda-forge
libstdcxx-ng 9.2.0 hdf63c60_2 conda-forge
libtiff 4.1.0 hc3755c2_3 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxml2 2.9.10 hee79883_0 conda-forge
llvm-openmp 8.0.1 hc9558a2_0 conda-forge
lz4-c 1.8.3 he1b5a44_1001 conda-forge
mafft 7.455 h516909a_0 bioconda
make 4.2.1 h14c3975_2004 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
numpy 1.16.5 py27h95a1406_0 conda-forge
openjdk 11.0.1 h600c080_1018 conda-forge
openmp 8.0.1 0 conda-forge
openssl 1.1.1d h516909a_0 conda-forge
pango 1.42.4 ha030887_1 conda-forge
pcre 8.43 he1b5a44_0 conda-forge
perl 5.26.2 h516909a_1006 conda-forge
phyloflash 3.3b3 0 bioconda
pigz 2.3.4 0 conda-forge
pip 20.0.2 py27_1 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
pthread-stubs 0.4 h14c3975_1001 conda-forge
pysam 0.15.3 py27hbcae180_3 bioconda
python 2.7.15 h5a48372_1009 conda-forge
r-assertthat 0.2.1 r36h6115d3f_1 conda-forge
r-backports 1.1.5 r36hcdcec82_0 conda-forge
r-base 3.6.2 h3a67422_0 conda-forge
r-cli 2.0.1 r36h6115d3f_0 conda-forge
r-colorspace 1.4_1 r36hcdcec82_1 conda-forge
r-crayon 1.3.4 r36h6115d3f_1002 conda-forge
r-digest 0.6.23 r36h0357c0b_0 conda-forge
r-ellipsis 0.3.0 r36hcdcec82_0 conda-forge
r-fansi 0.4.1 r36hcdcec82_0 conda-forge
r-farver 2.0.3 r36h0357c0b_0 conda-forge
r-getopt 1.20.3 r36_1 conda-forge
r-ggdendro 0.1_20 r36h6115d3f_1002 conda-forge
r-ggplot2 3.2.1 r36h6115d3f_0 conda-forge
r-glue 1.3.1 r36hcdcec82_1 conda-forge
r-gtable 0.3.0 r36h6115d3f_2 conda-forge
r-labeling 0.3 r36h6115d3f_1002 conda-forge
r-lattice 0.20_38 r36hcdcec82_1002 conda-forge
r-lazyeval 0.2.2 r36hcdcec82_1 conda-forge
r-lifecycle 0.1.0 r36h6115d3f_0 conda-forge
r-magrittr 1.5 r36h6115d3f_1002 conda-forge
r-mass 7.3_51.5 r36hcdcec82_0 conda-forge
r-matrix 1.2_18 r36hcdcec82_0 conda-forge
r-mgcv 1.8_31 r36hcdcec82_0 conda-forge
r-munsell 0.5.0 r36h6115d3f_1002 conda-forge
r-nlme 3.1_143 r36h9bbef5b_0 conda-forge
r-optparse 1.6.4 r36h6115d3f_0 conda-forge
r-pillar 1.4.3 r36h6115d3f_0 conda-forge
r-pkgconfig 2.0.3 r36h6115d3f_0 conda-forge
r-plyr 1.8.5 r36h0357c0b_0 conda-forge
r-r6 2.4.1 r36h6115d3f_0 conda-forge
r-rcolorbrewer 1.1_2 r36h6115d3f_1002 conda-forge
r-rcpp 1.0.3 r36h0357c0b_0 conda-forge
r-reshape2 1.4.3 r36h0357c0b_1004 conda-forge
r-rlang 0.4.4 r36hcdcec82_0 conda-forge
r-scales 1.1.0 r36h6115d3f_0 conda-forge
r-stringi 1.4.5 r36h0e574ca_0 conda-forge
r-stringr 1.4.0 r36h6115d3f_1 conda-forge
r-tibble 2.1.3 r36hcdcec82_1 conda-forge
r-utf8 1.1.4 r36hcdcec82_1001 conda-forge
r-vctrs 0.2.2 r36hcdcec82_0 conda-forge
r-viridislite 0.3.0 r36h6115d3f_1002 conda-forge
r-withr 2.1.2 r36h6115d3f_1001 conda-forge
r-zeallot 0.1.0 r36h6115d3f_1001 conda-forge
readline 8.0 hf8c457e_0 conda-forge
samtools 1.10 h9402c20_2 bioconda
scipy 1.2.1 py27h921218d_2 conda-forge
sed 4.7 h1bed415_1000 conda-forge
setuptools 44.0.0 py27_0 conda-forge
spades 3.14.0 h2d02072_0 bioconda
sqlite 3.30.1 hcee41ef_0 conda-forge
tbb 2019.9 hc9558a2_1 conda-forge
tk 8.6.10 hed695b0_0 conda-forge
tktable 2.10 h555a92e_3 conda-forge
vsearch 2.14.1 h2d02072_0 bioconda
wheel 0.34.1 py27_0 conda-forge
xorg-fixesproto 5.0 h14c3975_1002 conda-forge
xorg-inputproto 2.3.2 h14c3975_1002 conda-forge
xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 h84519dc_1000 conda-forge
xorg-libx11 1.6.9 h516909a_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxfixes 5.0.3 h516909a_1004 conda-forge
xorg-libxi 1.7.10 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-libxtst 1.2.3 h516909a_1002 conda-forge
xorg-recordproto 1.14.2 h516909a_1002 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
xorg-xproto 7.0.31 h14c3975_1007 conda-forge
xz 5.2.4 h14c3975_1001 conda-forge
zlib 1.2.11 h516909a_1006 conda-forge
zstd 1.4.4 h3b9ef0a_1 conda-forge