Publicações
2023
STAHNKE, Caroline; MOLINA DE ARMAS, Elvismary; BESSA PEREIRA CHAVES, Claudia; SCHERER, Nicole de Miranda; PALMA MATTA, Bruna; CARVALHO DE BARROS MOREIRA, Fábio; BERGMANN, Anke; BORONI, Mariana; EVANGELISTA DOS SANTOS, Anna Claudia; MARTINS MOREIRA, Miguel Angelo. BRCA1, BRCA2, and TP53 germline and somatic variants and clinicopathological characteristics of Brazilian patients with epithelial ovarian cancer. CANCER MEDICINE, WILEY, v. 1, p. 105236, 2023. DOI: 10.1002/cam4.6729
2022
Lopes B. A. ; Poubel C. P. ; Teixeira C.E. ; Caye-Eude A. ; Cavé H. ; Meyer C. ; Marschalek R. ; Boroni M. ; Emerenciano M. Novel Diagnostic and Therapeutic Options for KMT2A-Rearranged Acute Leukemias. Front. Pharmacol. 13:749472, 2022. https://doi.org/ 10.3389/fphar.2022.749472 - Github: https://github.com/bioinformatics-inca/KMT2Ar-prediction
Pretti, M. A. M. ; Galvani, R. G. ; Scherer, N. M. ; Farias, A. S. ; Boroni, M. In silico analysis of mutant epitopes in new SARS-CoV-2 lineages suggest global enhanced CD8+ T cell reactivity and also signs of immune response escape. Infection Genetics And Evolution, v. 1, p. 105236, 2022. https://doi.org/10.1016/j.meegid.2022.105236
2021
Souza-Squiavinato, A. C. M. ; Vasconcelos, R. I. ; Gehren, A. S. ; Fernandes, P. V. ; de Oliveira, I. M. ; Boroni, M. ; Morgado-díaz, J. A. Cofilin-1, LIMK1 and SSH1 are differentially expressed in locally advanced colorectal cancer and according to consensus molecular subtypes. Cancer Cell International, v. 21, p. s12935, 2021. https://doi.org/10.1186/s12935-021-01770-w
Andrade, R. C. ; Boroni, M. ; Amazonas, M. K. ; Vargas, F. R. New drug candidates for osteosarcoma: Drug repurposing based on gene expression signature. Computers in Biology and Medicine, v. 122, p. 104470, 2021. https://doi.org/10.1016/j.compbiomed.2021.104470
Guimaraes, G. R. ; Almeida, P. P. ; Santos, L. O. ; Rodrigues, L. P. ; Carvalho, J. L. ; Boroni, M. Hallmarks of Aging in Macrophages: Consequences to Skin Inflammaging. Cells, v. 10, p. 1323, 2021. https://doi.org/10.3390/cells10061323
Poubel, C. P. ; Boroni, M. ; Emerenciano, M. 13q12.2 deletions and FLT3 overexpression in acute leukemias. Blood Advances, v. 5, p. 2075-2078, 2021. https://doi.org/10.1182/bloodadvances.2020003643
Coutinho, D. F. ; Fernandez, T. S. ; Abdelhay, E. ; Monte-mór, B. C. R. ; Zalcberg, I. R. ; Boroni, M. ; Batalha, A. B. W. ; Kalonji, M. ; Bueno, A. S. ; de Mello, F. V. ; Costa, E. S. ; Vianna, D. T. ; Rouxinol, S. Somatic genomic variants in refractory cytopenia of childhood. Pediatric Hematology Oncology Journal, v. 10, p. 1, 2021. https://doi.org/10.1016/j.phoj.2021.04.180
Freitas, J. T. ; Lopez, J. ; Llorian, C. ; Boroni, M. ; Kos, L. The immunosuppressive role of Edn3 overexpression in the melanoma microenvironment. Pigment Cell & Melanoma Research, v. 00, p. pcmr.13002, 2021. https://doi.org/10.1111/pcmr.13002
Seuanez, H. N. ; Viana, M. C. ; Mendonca, V. ; Brant, A. ; Boroni, M. ; Lucena, E. Absence of Pathogenicity in Non-Human Primates of Mutations Related to Retinoblastoma in Humans. World Journal of Veterinary Science, v. 1, p. 1, 2021.
Soares-lima, S. C. ; Mehanna, H. ; Camuzi, D. ; DE Souza-santos, P. T. ; Simão, T. A. ; Nicolau-neto, P. ; Almeida lopes, M. S. ; Cuenin, C. ; Talukdar, F. R. ; Batis, N. ; Costa, I. ; Dias, F. ; Degli esposti, D. ; Boroni, M. ; Herceg, Z. ; Ribeiro pinto, L. F. Upper Aerodigestive Tract Squamous Cell Carcinomas Show Distinct Overall DNA Methylation Profiles and Different Molecular Mechanisms behind WNT Signaling Disruption. Cancers, v. 13, p. 3014, 2021. https://doi.org/10.3390/cancers13123014
2020
Pretti, M. A. M. ; Galvani, R. G. ; Vieira, G. F. ; Bonomo, A. ; Bonamino, M. H. ; Boroni, M. Class I HLA allele predicted antigenic coverages for Spike and Nucleocapsid proteins are associated with deaths related to COVID-1. Frontiers in Immunology, v. 11, p. 565730, 2020. https://doi.org/10.3389/fimmu.2020.565730
Boroni, M. ; Zonari, A. ; Oliveira, C. R. ; Alkatib, K. ; Cruz, E. ; Brace, L. E. ; Carvalho, J. L. Highly accurate Skin-Specific methylome analysis algorithm as a platform to screen and validate therapeutics for healthy aging. Clinical Epigenetics, 12(1):105, 2020. https://doi.org/10.1186/s13148-020-00899-1
de Castro, T. ; Canesso, M. ; Boroni, M. ; Chame, D. F. ; Souza, D. ; de Toledo, N. E. ; Tahara, E. B. ; Pena, S. D. ; Machado, C. R. ; Chiari, E. ; Macedo, A. ; & Franco, G. R. Differential Modulation of Mouse Heart Gene Expression by Infection With Two Trypanosoma cruzi Strains: A Transcriptome Analysis. Frontiers in Genetics, 11, 1031, 2020. https://doi.org/10.3389/fgene.2020.01031
Pretti, M. A. M. ; Bernardes S. ; Cruz, J. G. V. ; Boroni, M. ; Possik, P. A. . Extracellular vesicle-mediated crosstalk between melanoma and the immune system: impact on tumor progression and therapy response. Journal of Leukocyte Biology, v. 108, p. 1, 2020. http://dx.doi.org/10.1002/JLB.3MR0320-644R
Jorge, N.A.N., Cruz, J.G.V., Pretti, M.A.M., Bonamino, H.M., Possik, A.P., Boroni, M. Poor clinical outcome in metastatic melanoma is associated with a microRNA-modulated immunosuppressive tumor microenvironment. J Transl Med 18, 56, 2020. https://doi.org/10.1186/s12967-020-02235-w
Moreira, D. ; Lamarca, A. ; Coelho, A. ; Furtado, C ; Scherer, N. M. ; Moreira, M. A. ; Seuanez, H. N. ; Boroni, M. Transcriptome of the Southern Muriqui Brachyteles arachnoides (Primates:Platyrrhini), a Critically Endangered New World Monkey: Evidence of Adaptive Evolution. Frontiers in Genetics, v. 11, p. 831, 2020. https://doi.org/10.3389/fgene.2020.00831
Barros, L. R. C. ; Souza-Santos, P. T. ; Pretti, M. A. M. ; Vieira, G. F. ; Bragatte, M. A. S. ; Mendes, M. F. A. ; De Freitas, M. V. ; Scherer, N. M. ; De Oliveira, I. M. ; Rapozo, D. C. M. ; Fernandes, P. V. ; Simão, T. A. ; Soares-Lima, S. C. ; Boroni, M. ; Ribeiro Pinto, L. F. ; Bonamino, M. H. High infiltration of B cells in tertiary lymphoid structures, TCR oligoclonality, and neoantigens are part of esophageal squamous cell carcinoma microenvironment. Journal of Leukocyte Biology, v. 12, p. 1e, 2020. http://dx.doi.org/10.1002/jlb.5ma0720-710rrr
Pérez, A. G. ; Andrade‑Da‑Costa, J. ; De Souza, W. F. ; De Souza Ferreira, M. ; Boroni, M. ; De Oliveira, I. M. ; Freire‑Neto, C. A.; Fernandes, P. V. ; De Lanna, C. A. ; Souza‑Santos, P. T. ; Morgado‑Díaz, J. A. ; De-Freitas‑Junior, J. M. N‑glycosylation and receptor tyrosine kinase signaling affect claudin‑3 levels in colorectal cancer cells. Oncology Reports. 44, no. 4: 1649-1661, 2020. https://doi.org/10.3892/or.2020.7727
2019
Poubel, C. P. ; Mansur M. B. ; Boroni M. ; Emerenciano, M. . FLT3 overexpression in acute leukaemias: New insights into the search for molecular mechanisms. Biochimica et Biophysica Acta-Reviews on Cancer v. 1872, p. 80-88, 2019. http://dx.doi.org/10.1016/j.bbcan.2019.06.001
Guerra JV da S, Pereira BM de S, Cruz JGV da, Scherer N de M, Furtado C, Montalvão de Azevedo R, Oliveira PSL de, Faria P, Boroni M, de Camargo B, et al. Genes controlled by DNA methylation are involved in Wilms tumor progression. Cells v. 8. 2019. http://dx.doi.org/10.3390/cells8080921
Taniguchi H, Yamada T, Wang R, Tanimura K, Adachi Y, Nishiyama A, Tanimoto A, Takeuchi S, Araujo LH, Boroni M, Yoshimura A, Shiotsu S, Matsumoto I, Watanabe S, Kikuchi T, Miura S, Tanaka H, Kitazaki T, Yamaguchi H, Mukae H, Uchino J, Uehara H, Takayama K, Yano S. AXL confers intrinsic resistance to osimertinib and advances the emergence of tolerant cells. Nat Commun. 2019 Jan 16;10(1):259. https://doi.org/10.1038/s41467-018-08074-0
2018
Costa RL, Boroni M, Soares MA. Distinct co-expression networks using multi-omic data reveal novel interventional targets in HPV-positive and negative head-and-neck squamous cell cancer. Sci Rep. 2018 Oct 15;8(1):15254. https://doi.org/10.1038/s41598-018-33498-5
Pereira, M B ; Barros, L R C ; Bracco, P A ; Vigo, A ; Boroni, M ; Bonamino, M H ; Lenz, G. Transcriptional characterization of immunological infiltrates and their relation with glioblastoma patients overall survival. OncoImmunology, v. 01, p. e1431083, 2018. https://doi.org/10.1080/2162402X.2018.1431083
Boroni, M ; Sammeth, M ; Gava, S G ; Jorge, N A N ; Macedo, A M ; Machado, C R ; Mourão, M M ; Franco, G R. Landscape of the spliced leader trans-splicing mechanism in Schistosoma mansoni. Scientific Reports, v. 8, p. 3877, 2018. 10.1038/s41598-018-22093-3
Nicolau-Neto, P ; Da Costa, N M ; Santos, P T De S ; Gonzaga, I M ; Ferreira, M A ; Guaraldi, S ; Moreira, M A ; Seuánez, H N ; Brewer, L ; Bergmann, A ; Boroni, M ; Mencalha, A L ; Kruel, C D P ; Lima, S C S ; Esposito, D ; Simão, T A ; Pinto, L F R. Esophageal squamous cell carcinoma transcriptome reveals the effect of FOXM1 on patient outcome through novel PIK3R3 mediated activation of PI3K signaling pathway. Oncotarget, v. 9, p. 16634, 2018. 10.18632/oncotarget.24621
Até 2017
Penha, R C C ; Lima, S C S ; Boroni, M ; Ramalho-Oliveira, R ; Viola, J P ; De Carvalho, D P ; Fusco, A ; Pinto, L F R. Intrinsic LINE-1 Hypomethylation and Decreased Brca1 Expression are Associated with DNA Repair Delay in Irradiated Thyroid Cells. Radiation Research, v. 10, p. RR14532.1, 2017. 10.1667/RR14532.1
Binato, R ; Cruz Santos, E ; Boroni, M ; Demachki, S ; Assumpção, P ; Abdelhay, E. A common molecular signature of intestinal-type gastric carcinoma indicates processes related to gastric carcinogenesis. Oncotarget, v. online, p. 1, 2017. 10.18632/oncotarget.23670
Viana, M C ; Tavares, W C ; Brant, A ; Boroni, M. ; Suanez, H N. The human retinoblastoma susceptibility gene (RB1): an evolutionary story in primates. Mammalian Genome, p. 1-15, 2017. 10.1007/s00335-017-9689-4
Eser, P ; Wachutka, L ; Maier, K C ; Demel, C ; Boroni, M ; Iyer, S ; Cramer, P ; Gagneur, J. Determinants of RNA metabolism in the Schizosaccharomyces pombe genome. Molecular Systems Biology, v. 12, p. 857-857, 2016. 10.15252/msb.20156526