The credible and detailed publications linked at the bottom of this page take the structure of SARS-CoV-2, and its unique characteristics which are uncommon in SARS-like viruses into consideration when theorizing its origin. They offer a new perspective to the nature of viral replication by using genomic data to emphasize variations that could have arisen as a result of natural selection and adaptation.
Scientists say that SARS-CoV-2 might have originated from a bat. However, an animal sold at the Wuhan seafood market might have been the intermediate host which passed the Coronavirus from bat to human (zoonotic transfer). Studies have proven that SARS-CoV-2 is not a result of a purposefully manipulated lab construct but rather a result of mutations in structure due to natural selection; this natural selection occurs either on a human or a human-like ACE2 receptor. Interestingly, though the RBD of COVID-19 binds to the ACE2 receptors with a much higher binding affinity than SARS-CoV, analysis predicts that this cannot occur in normal circumstances given that the interaction is not optimal/ideal. This is because the RBD sequence of COVID-19 is different from that of SARS-CoV. The mutated RBD, therefore, cannot bind without optimal conditions. This observation further supports the theory of natural selection either in a homologous animal host before zoonotic transfer or in a human after zoonotic transfer. There is also a theory that natural selection could have occurred during zoonotic transfer.
Sources (all of above information):
The Lancet. "Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding," https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(20)30251-8/fulltext#seccestitle10
Andersen, K.G., Rambaut, A., Lipkin, W.I. et al. The proximal origin of SARS-CoV-2. Nat Med (2020). https://doi.org/10.1038/s41591-020-0820-9.
RaTG13 sampled from the Rhinolophus affinis bat is about 96% similar to SARS-CoV-2. However, its RBD in the S1 subunit of the Spike Protein is different.
Scientists are still trying to understand the origin of COVID-19; specifically, they are trying to trace the intermediate host, which remains unknown. However, in order to trace out the exact origin of the virus, they need virus sequences from immediate non-human animal sources. Overall, they need more samples and sequences from where the epidemic first began, Wuhan, China to then be able to figure out which intermediate host from the Wuhan seafood market was responsible for facilitating zoonotic transfer, first from animal to human and eventually human to human.
Source: Dr. Attapon Cheepsattayakorn and Dr. Ruangrong Cheepsattayakorn. “Proximal Origin and Phylogenetic Analysis of COVID-19 (2019-nCoV or SARS-CoV-2)”. EC Microbiology SI.02 (2020): 09-12.
Image Credit: From ScienceDirect, https://www.sciencedirect.com/science/article/pii/S2090123220300540#f0025
Bats are a very ancient, unique, diverse, and widespread species, whose interaction with pathogens is special because of their very strong immune system. There are approximately 1421 species of bats. Scientists believe that bats are better adapted to viruses and other dangerous pathogens because they are ancient (more ancient than humans) with a unique biology that allows them to increase body temperature and theoretically kill any lingering viral elements. However, they are the primary reservoir host of many viruses like ebola, marburg, SARS-CoV, and rabies. Their significant role in disease emergence is concerning, especially considering that they are geographically widespread, and biologically distinctive. Thus, they are most prone to carry and spread pathogens yet remain unaffected. It is complicated to distinguish an infected bat with a healthy bat, unless there are evident behavioral abnormalities; a bat moving on its own or urging for food during the day, for instance, is peculiar given that they are nocturnal and travel in large groups under normal circumstances.
They shed viruses as they migrate. Coronavirus, Rabies, Marburg, Nipah, Hendra, and Ebola.
NEXT: Find out more about bats
Image Credit: Both radar images above from Kut 90.5 - Austin's NPR Station, https://www.kut.org/post/some-weird-storm-radar-nope-its-bats
Why exactly are bats important reservoir hosts of emerging viruses? Can we use this information to eradicate or stop the spread of viruses that spillover from the bat?
What characteristics of the bat's immune system make it tolerable of various dangerous pathogens? What can we conclude from comparing the bat's immune system with the human's? Can we learn something that will help us strengthen the human immune system, making it tolerable to various pathogens?