RScripts

Basic R

Intro to R (script):

• Introduction to R

• Basic commands

• Discussion of data types

• Interacting with data frames (using iris)

• Plotting with ggplot2

scRNA

Pathway analysis and UCell scoring (script):

• Starts with a Seurat object with basic processing previously performed

• Generates cluster markers

• Performs GO enrichment testing on cluster markers

• Generates UCell module scores for pathways

Pathway Analysis

Pathway analysis w/ MSigDB (script):

• Starts with a Seurat object with basic processing previously performed

• Generates cluster markers

• Performs GO enrichment testing on cluster markers

• Generates UCell module scores for pathways