Guides and Vignettes

• Single Cell Best Practices: an online book intended to guide beginners and experienced professionals in the best practices for analyzing scRNA data. This is a fantastic resource that covers most (if not all) aspects of scRNA analysis. The provided code in this guide uses Python, unlike the majority of the shared resources. 

• Seurat Guides: Seurat is the go-to package when analyzing single-cell data in R and there is great documentations and guides to run a variety of different analyses.

• A Guide to Analyzing Single-cell Datasets: a useful guide walking through a scRNA analyses using R.

Videos: 

• Intro to scRNA-seq with Seurat: a guided walkthrough of Seurat's introduction vignette from the UofM Data Analysis Networking Group! (DANG!)

• Introduction to single-cell RNA-seq and Seurat: the first in a series of videos using Seurat to analyze scRNA.