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The Matrisome Project
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    • Homo sapiens
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    • Coturnix japonica (quail)
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  • Tools
    • Matrisome AnalyzeR
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    • MatrisomeDB
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    • Matrisome MSigDB
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The Matrisome Project
  • Home
  • Matrisome Annotations
    • Homo sapiens
    • Mus musculus
    • Danio rerio
    • Drosophila melanogaster
    • Caenorhabditis elegans
    • Schmidtea mediterranea (planarian)
    • Coturnix japonica (quail)
    • Bos taurus (cow)
  • Tools
    • Matrisome AnalyzeR
    • MatriCom
    • MatrisomeDB
  • Resources
    • Matrisome MSigDB
  • Reagents
  • Matrisome X HuBMAP
  • Contributors
  • Publications
  • External Links
  • Contact us
  • More
    • Home
    • Matrisome Annotations
      • Homo sapiens
      • Mus musculus
      • Danio rerio
      • Drosophila melanogaster
      • Caenorhabditis elegans
      • Schmidtea mediterranea (planarian)
      • Coturnix japonica (quail)
      • Bos taurus (cow)
    • Tools
      • Matrisome AnalyzeR
      • MatriCom
      • MatrisomeDB
    • Resources
      • Matrisome MSigDB
    • Reagents
    • Matrisome X HuBMAP
    • Contributors
    • Publications
    • External Links
    • Contact us

MatrisomeDB

MatrisomeDB is a web application originally developed by Dr. Naba and currently maintained by the Naba lab in collaboration with the Gao lab. MatrisomeDB is a searchable collection of curated proteomic data on the ECM of healthy and diseased human and murine samples. 

Publications:

  1. Shao X, Gomez CD, Kapoor N, Considine JM, Grams C, Gao Y, Naba A. MatrisomeDB 2.0: 2023 updates to the ECM-protein knowledge database. Nucleic Acids Research, 2023, gkac1009. https://doi.org/10.1093/nar/gkac1009 

  2. Shao X, Taha IN, Clauser KR, Gao Y, Naba A. MatrisomeDB: the ECM-protein knowledge database. Nucleic Acids Research, 2019, gkz849. https://doi.org/10.1093/nar/gkz849

  3. Naba A, Clauser K.R, Ding H, Whittaker C.A, Carr S.A, and Hynes R.O. The extracellular matrix in the “omics” era. Matrix Biology, 2016, pii: S0945-053X(15)00121-3. https://doi.org/10.1016/j.matbio.2015.06.003

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