Matrisome gene sets in MSigDB
The Molecular Signatures Database (MSigDB) is a resource of tens of thousands of annotated gene sets for use with GSEA software, divided into Human and Mouse collections.
The in-silico predicted matrisome lists and experimentally-derived matrisome signatures are deployed as gene sets via MSigDB and can be found under the curated collections (C2 and M2) and below.
Human matrisome gene sets
NABA_CORE_MATRISOME
NABA_ECM_GLYCOPROTEINS
NABA_COLLAGENS
NABA_PROTEOGLYCANS
NABA_MATRISOME_ASSOCIATED
NABA_ECM_AFFILIATED
NABA_ECM_REGULATORS
NABA_SECRETED_FACTORS
NABA_BASEMENT_MEMBRANES
NABA_MATRISOME_POORLY_METASTATIC_MELANOMA
NABA_MATRISOME_POORLY_METASTATIC_MELANOMA_TUMOR_CELL_DERIVED
NABA_MATRISOME_HIGHLY_METASTATIC_MELANOMA
NABA_MATRISOME_HIGHLY_METASTATIC_MELANOMA_TUMOR_CELL_DERIVED
NABA_MATRISOME_PRIMARY_METASTATIC_COLORECTAL_TUMOR
NABA_MATRISOME_METASTATIC_COLORECTAL_LIVER_METASTASIS
NABA_MATRISOME_POORLY_METASTATIC_BREAST_CANCER
NABA_MATRISOME_POORLY_METASTATIC_BREAST_CANCER_TUMOR_CELL_DERIVED
NABA_MATRISOME_HIGHLY_METASTATIC_BREAST_CANCER
NABA_MATRISOME_HIGHLY_METASTATIC_BREAST_CANCER_TUMOR_CELL_DERIVED
HEBERT_MATRISOME_TNBC_LUNG_METASTASIS
HEBERT_MATRISOME_TNBC_LUNG_METASTASIS_TUMOR_CELL_DERIVED
HEBERT_MATRISOME_TNBC_BONE_BRAIN_LIVER_LUNG_METASTASTASES
HEBERT_MATRISOME_TNBC_BONE_BRAIN_LUNG_LIVER_METASTASTASES_TUMOR_CELL_DERIVED
HEBERT_MATRISOME_TNBC_BONE_METASTASIS
HEBERT_MATRISOME_TNBC_BONE_METASTASIS_TUMOR_CELL_DERIVED
HEBERT_MATRISOME_TNBC_BRAIN_METASTASIS
HEBERT_MATRISOME_TNBC_BRAIN_METASTASIS_TUMOR_CELL_DERIVED
HEBERT_MATRISOME_TNBC_LIVER_METASTASIS
NABA_MATRISOME_HGSOC_OMENTAL_METASTASIS
NABA_MATRISOME_MULTIPLE_MYELOMA
DI_MARTINO_MATRISOME_HIGHLY_PROLIFERATIVE_HNSCC
DI_MARTINO_MATRISOME_HIGHLY_PROLIFERATIVE_HNSCC_TUMOR_CELL_DERIVED
Mouse matrisome gene sets
NABA_COLLAGENS
NABA_PROTEOGLYCANS
NABA_MATRISOME_ASSOCIATED
NABA_ECM_AFFILIATED
NABA_ECM_REGULATORS
NABA_SECRETED_FACTORS
NABA_MATRISOME_HYPERPLASTIC_PANCREATIC_ISLETS
NABA_MATRISOME_ANGIOGENIC_PANCREATIC_ISLETS
NABA_MATRISOME_INSULINOMA
NABA_MATRISOME_BLEO_FIBROTIC_LUNG
NABA_MATRISOME_METASTATIC_LUNG_LYMPH_NODE_METASTASIS
NABA_MATRISOME_PRIMARY_METASTATIC_LUNG_TUMOR