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The Matrisome Project
  • Home
  • Matrisome Annotations
    • Homo sapiens
    • Mus musculus
    • Danio rerio
    • Drosophila melanogaster
    • Caenorhabditis elegans
    • Schmidtea mediterranea (planarian)
    • Nematostella vectensis (sea anemone)
    • Coturnix japonica (quail)
    • Gallus gallus (chicken)
    • Bos taurus (cow)
  • Tools
    • Matrisome AnalyzeR
    • MatriCom
    • MatrisomeDB
  • Resources
    • Matrisome MSigDB
  • Reagents
  • Matrisome X HuBMAP
  • Contributors
  • Publications
  • External Links
  • Contact us
The Matrisome Project
  • Home
  • Matrisome Annotations
    • Homo sapiens
    • Mus musculus
    • Danio rerio
    • Drosophila melanogaster
    • Caenorhabditis elegans
    • Schmidtea mediterranea (planarian)
    • Nematostella vectensis (sea anemone)
    • Coturnix japonica (quail)
    • Gallus gallus (chicken)
    • Bos taurus (cow)
  • Tools
    • Matrisome AnalyzeR
    • MatriCom
    • MatrisomeDB
  • Resources
    • Matrisome MSigDB
  • Reagents
  • Matrisome X HuBMAP
  • Contributors
  • Publications
  • External Links
  • Contact us
  • More
    • Home
    • Matrisome Annotations
      • Homo sapiens
      • Mus musculus
      • Danio rerio
      • Drosophila melanogaster
      • Caenorhabditis elegans
      • Schmidtea mediterranea (planarian)
      • Nematostella vectensis (sea anemone)
      • Coturnix japonica (quail)
      • Gallus gallus (chicken)
      • Bos taurus (cow)
    • Tools
      • Matrisome AnalyzeR
      • MatriCom
      • MatrisomeDB
    • Resources
      • Matrisome MSigDB
    • Reagents
    • Matrisome X HuBMAP
    • Contributors
    • Publications
    • External Links
    • Contact us

Matrisome AnalyzeR

Matrisome AnalyzeR is a web application developed by the Naba and Izzi labs that uses Matrisome lists to identify matrisome molecules (e.g., genes, transcripts, proteins) in -omic datasets and annotate and tabulate these molecules according to matrisome divisions and categories.

Test file gallery | R package

Publication:

Petrov PB, Considine JM, Izzi, V, and Naba A. Matrisome AnalyzeR: A suite of tools to annotate and quantify ECM molecules in big datasets across organisms. Journal of Cell Science, 2023, 136 (17): jcs261255. https://doi.org/10.1242/jcs.261255. 

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